RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 KANSL1Q7Z3B3 1105 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 GLRX5Q86SX6 157 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 SLCO6A1Q86UG4 719 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 PDZD3Q86UT5 571 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 ZSCAN30Q86W11 494 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 TMTC1Q8IUR5 882 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 RHOT1Q8IXI2 618 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 TEX26Q8N6G2 289 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 CXorf40AQ8TE69 158 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 NSMCE1Q8WV22 266 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 RNF25Q96BH1 459 aaPredicted RBP15.15■□□□□ 0.02
VPS39-210ENST00000568357 TSGA13Q96PP4 275 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 NUDCD1Q96RS6 583 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 MGME1Q9BQP7 344 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 DTLQ9NZJ0 730 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 SALL4Q9UJQ4 1053 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 MSRB2Q9Y3D2 182 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 ALG6Q9Y672 507 aa15.15■□□□□ 0.02
VPS39-210ENST00000568357 DOCK9Q9BZ29 2069 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 A6NNZ2 444 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 FPGTO14772 594 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 MATN3O15232 486 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 TM7SF2O76062 418 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 NDUFA10O95299 355 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 ITGAVP06756 1048 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 CCNCP24863 283 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 EPHA8P29322 1005 aaPredicted RBP15.14■□□□□ 0.01
VPS39-210ENST00000568357 HSPA9P38646 679 aaKnown RBP15.14■□□□□ 0.01
VPS39-210ENST00000568357 GRK6P43250 576 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 ELP6Q0PNE2 266 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 IHHQ14623 411 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 IFI16Q16666 785 aaKnown RBP15.14■□□□□ 0.01
VPS39-210ENST00000568357 TPRG1LQ5T0D9 272 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 CFAP58Q5T655 872 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 KYAT3Q6YP21 454 aaKnown RBP15.14■□□□□ 0.01
VPS39-210ENST00000568357 PROSER1Q86XN7 944 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 PLD5Q8N7P1 536 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 PNPLA1Q8N8W4 532 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 MAML1Q92585 1016 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 NT5MQ9NPB1 228 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 SCUBE2Q9NQ36 999 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 MBNL1Q9NR56 388 aaKnown RBP15.14■□□□□ 0.01
VPS39-210ENST00000568357 GPR27Q9NS67 375 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 ATP8A1Q9Y2Q0 1164 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 COQ6Q9Y2Z9 468 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 REXO2Q9Y3B8 237 aaKnown RBP15.14■□□□□ 0.01
VPS39-210ENST00000568357 GPSM3Q9Y4H4 160 aa15.14■□□□□ 0.01
VPS39-210ENST00000568357 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.13■□□□□ 0.01
VPS39-210ENST00000568357 ZNF487B1APH4 448 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 YKT6O15498 198 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 HTRA2O43464 458 aaPredicted RBP15.13■□□□□ 0.01
VPS39-210ENST00000568357 SPOPO43791 374 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 SDC3O75056 442 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 KRT1P04264 644 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 ATXN1LP0C7T5 689 aaKnown RBP15.13■□□□□ 0.01
VPS39-210ENST00000568357 FTH1P19P0C7X4 201 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 MMP12P39900 470 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 LIG3P49916 1009 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 PFN3P60673 137 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 POLR2LP62875 67 aaKnown RBP15.13■□□□□ 0.01
VPS39-210ENST00000568357 RALGDSQ12967 914 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 FZD2Q14332 565 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 ZNF542PQ5EBM4 170 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 SLC9A4Q6AI14 798 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 ERAP2Q6P179 960 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 IGSF10Q6WRI0 2623 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 PTAR1Q7Z6K3 402 aaPredicted RBP15.13■□□□□ 0.01
VPS39-210ENST00000568357 BBS5Q8N3I7 341 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 SLC25A45Q8N413 288 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 OXR1Q8N573 874 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 TP53I13Q8NBR0 393 aaPredicted RBP15.13■□□□□ 0.01
VPS39-210ENST00000568357 DENND6BQ8NEG7 585 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 FAM174AQ8TBP5 190 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 FATE1Q969F0 183 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 BBC3Q96PG8 261 aaPredicted RBP15.13■□□□□ 0.01
VPS39-210ENST00000568357 CDC6Q99741 560 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 MAK16Q9BXY0 300 aaKnown RBP15.13■□□□□ 0.01
VPS39-210ENST00000568357 RBM22Q9NW64 420 aaKnown RBP eCLIP15.13■□□□□ 0.01
VPS39-210ENST00000568357 TOR4AQ9NXH8 423 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 DUSP10Q9Y6W6 482 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 PCNX2A6NKB5 2137 aa15.13■□□□□ 0.01
VPS39-210ENST00000568357 FREM2Q5SZK8 3169 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 A0A0A6YYK5 440 aaPredicted RBP15.12■□□□□ 0.01
VPS39-210ENST00000568357 SPTY2D1-AS1A0A0U1RR47 76 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 A8MX80 341 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 CAPNS1P04632 268 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 C6P13671 934 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 CCNB1P14635 433 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 MX2P20592 715 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 IGFALSP35858 605 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 RABIFP47224 123 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 ITKQ08881 620 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 TRAF2Q12933 501 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 TAZQ16635 292 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 COL28A1Q2UY09 1125 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 FAM182AQ5T1J6 154 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 TIGD7Q6NT04 549 aaPredicted RBP15.12■□□□□ 0.01
VPS39-210ENST00000568357 MFSD7Q6UXD7 560 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 VSIG1Q86XK7 387 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 DCP2Q8IU60 420 aaKnown RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms