RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 FTSJ3Q8IY81 847 aaKnown RBP2.94□□□□□ -1.94
VPS35-207ENST00000568191 CEP70Q8NHQ1 597 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 ARRDC2Q8TBH0 407 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 CREB3L4Q8TEY5 395 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 CCT6BQ92526 530 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 FIG4Q92562 907 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 ZNF570Q96NI8 536 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 BABAM1Q9NWV8 329 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 TCF19Q9Y242 345 aa2.94□□□□□ -1.94
VPS35-207ENST00000568191 CPED1A4D0V7 1026 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 SH2D7A6NKC9 451 aaPredicted RBP2.93□□□□□ -1.94
VPS35-207ENST00000568191 CLDN14O95500 239 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 AFPP02771 609 aaKnown RBP2.93□□□□□ -1.94
VPS35-207ENST00000568191 SERPINB2P05120 415 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 GM2AP17900 193 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 CHKAP35790 457 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 GPD2P43304 727 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 CXCR3P49682 368 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 ARL16Q0P5N6 197 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 KRT72Q14CN4 511 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 OASLQ15646 514 aaKnown RBP2.93□□□□□ -1.94
VPS35-207ENST00000568191 C10orf62Q5T681 223 aaPredicted RBP2.93□□□□□ -1.94
VPS35-207ENST00000568191 FAM69BQ5VUD6 431 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 JMJD6Q6NYC1 403 aaPredicted RBP2.93□□□□□ -1.94
VPS35-207ENST00000568191 FOXL2NBQ6ZUU3 175 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 SUGP1Q8IWZ8 645 aaKnown RBP2.93□□□□□ -1.94
VPS35-207ENST00000568191 DSELQ8IZU8 1212 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 PARP16Q8N5Y8 322 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 MYCT1Q8N699 235 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 SCCPDHQ8NBX0 429 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 GJC3Q8NFK1 279 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 SPPL3Q8TCT6 385 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 LRRC8CQ8TDW0 803 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 RAB40AQ8WXH6 277 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 TANKQ92844 425 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 TMEM19Q96HH6 336 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 SPRY4Q9C004 299 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 MMP28Q9H239 520 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 EBF2Q9HAK2 575 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 TLR8Q9NR97 1041 aaKnown RBP2.93□□□□□ -1.94
VPS35-207ENST00000568191 SMYD2Q9NRG4 433 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 IL1RAPL1Q9NZN1 696 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 HDAC6Q9UBN7 1215 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 CDC14AQ9UNH5 594 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 CARD8Q9Y2G2 431 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 DNAJC16Q9Y2G8 782 aa2.93□□□□□ -1.94
VPS35-207ENST00000568191 A0A0G2JPF8 293 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 A0A1W2PS18 150 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 HNRNPCL3B7ZW38 293 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 C16orf97H3BN30 126 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 HNRNPCL1O60812 293 aaKnown RBP2.92□□□□□ -1.94
VPS35-207ENST00000568191 GUCY1B2O75343 617 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 RFPL2O75678 378 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 KDM4BO94953 1096 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 HNRNPCL4P0DMR1 293 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 VEGFAP15692 232 aaPredicted RBP2.92□□□□□ -1.94
VPS35-207ENST00000568191 SRD5A1P18405 259 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 RRM1P23921 792 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 PIGAP37287 484 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 TRAPPC10P48553 1259 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 ZNF132P52740 706 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 RAD23BP54727 409 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 ZNF155Q12901 538 aaPredicted RBP2.92□□□□□ -1.94
VPS35-207ENST00000568191 ILF3Q12906 894 aaKnown RBP eCLIP2.92□□□□□ -1.94
VPS35-207ENST00000568191 VEPH1Q14D04 833 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 POSTNQ15063 836 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 RBBP5Q15291 538 aaKnown RBP2.92□□□□□ -1.94
VPS35-207ENST00000568191 SOWAHAQ2M3V2 549 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 FBXO43Q4G163 708 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 ESCO2Q56NI9 601 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 NAPEPLDQ6IQ20 393 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 CPLX2Q6PUV4 134 aaKnown RBP2.92□□□□□ -1.94
VPS35-207ENST00000568191 MOGAT3Q86VF5 341 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 C2CD5Q86YS7 1000 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 SPATA5Q8NB90 893 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 DMBX1Q8NFW5 382 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 TNIP2Q8NFZ5 429 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 OR13A1Q8NGR1 328 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 STAMQ92783 540 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 RILPL2Q969X0 211 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 SIN3AQ96ST3 1273 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 TAOK3Q9H2K8 898 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 STN1Q9H668 368 aaKnown RBP2.92□□□□□ -1.94
VPS35-207ENST00000568191 EPHX3Q9H6B9 360 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 FKRPQ9H9S5 495 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 C17orf75Q9HAS0 396 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 SDF2L1Q9HCN8 221 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 SLC9A2Q9UBY0 812 aa2.92□□□□□ -1.94
VPS35-207ENST00000568191 KLRF2D3W0D1 207 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 NPIPB11E5RHQ5 1161 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 J3KR12 359 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 P2RY10O00398 339 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 PER2O15055 1255 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 XPNPEP2O43895 674 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 PEX14O75381 377 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 PRSS1P07477 247 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 LINC00271P0C7V0 271 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 IRF1P10914 325 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 CD72P21854 359 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 POU1F1P28069 291 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms