RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 IGLON5A6NGN9 336 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 MIF4GDA9UHW6 222 aaKnown RBP9.87□□□□□ -0.83
CLK3-220ENST00000567992 PRAMEF26H0Y7S4 382 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 H0Y8X5 98 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 APOC4-APOC2K7ER74 178 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 SLC31A1O15431 190 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 KRT86O43790 486 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 PGLSO95336 258 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 JCHAINP01591 159 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 APOC2P02655 101 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 SYPP08247 313 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 PTPN3P26045 913 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 CD38P28907 300 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 NXPH1P58417 271 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 AP1B1Q10567 949 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 WASHC5Q12768 1159 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 KLF1Q13351 362 aaPredicted RBP9.87□□□□□ -0.83
CLK3-220ENST00000567992 ZNF211Q13398 564 aaPredicted RBP9.87□□□□□ -0.83
CLK3-220ENST00000567992 NOMO1Q15155 1222 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 ZNF423Q2M1K9 1284 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 KDM7AQ6ZMT4 941 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 DPPA4Q7L190 304 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 ABI3BPQ7Z7G0 1075 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 ZSCAN30Q86W11 494 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 SPATS2Q86XZ4 545 aaKnown RBP9.87□□□□□ -0.83
CLK3-220ENST00000567992 MFSD2AQ8NA29 543 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 ASB12Q8WXK4 309 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 FEM1CQ96JP0 617 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 QKIQ96PU8 341 aaKnown RBP eCLIP9.87□□□□□ -0.83
CLK3-220ENST00000567992 MYOCQ99972 504 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 WRAP53Q9BUR4 548 aaKnown RBP9.87□□□□□ -0.83
CLK3-220ENST00000567992 GTPBP2Q9BX10 602 aaKnown RBP9.87□□□□□ -0.83
CLK3-220ENST00000567992 TDRD1Q9BXT4 1180 aaKnown RBP9.87□□□□□ -0.83
CLK3-220ENST00000567992 SLC17A9Q9BYT1 436 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 ZDHHC5Q9C0B5 715 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 BRD8Q9H0E9 1235 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 DNAAF2Q9NVR5 837 aaKnown RBP9.87□□□□□ -0.83
CLK3-220ENST00000567992 CDV3Q9UKY7 258 aaKnown RBP9.87□□□□□ -0.83
CLK3-220ENST00000567992 ANKRD6Q9Y2G4 727 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 FNDC3AQ9Y2H6 1198 aaKnown RBP9.87□□□□□ -0.83
CLK3-220ENST00000567992 RAI2Q9Y5P3 530 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 SPEGQ15772 3267 aa9.87□□□□□ -0.83
CLK3-220ENST00000567992 LRP4O75096 1905 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 MMP20O60882 483 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 PAK4O96013 591 aaPredicted RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 CPP00450 1065 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 PRLP01236 227 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 PDHA1P08559 390 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 C6P13671 934 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 HNRNPA2B1P22626 353 aaKnown RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 LHCGRP22888 699 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 CD68P34810 354 aaPredicted RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 LIG3P49916 1009 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 CLDN2P57739 230 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 SKOR1P84550 965 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 OTUD4Q01804 1114 aaKnown RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 ELP6Q0PNE2 266 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 PTPRRQ15256 657 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 SHBQ15464 509 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 TEAD4Q15561 434 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 HLA-BQ31612 363 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 TPRG1LQ5T0D9 272 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 MEI1Q5TIA1 1274 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 BZW1Q7L1Q6 419 aaKnown RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 ZC3H18Q86VM9 953 aaKnown RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 IQCHQ86VS3 1027 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 SLC22A18ASQ8N1D0 253 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 UBL4BQ8N7F7 174 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 TP53I13Q8NBR0 393 aaPredicted RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 DENND6BQ8NEG7 585 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 ACTL9Q8TC94 416 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 TFB1MQ8WVM0 346 aaKnown RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 PIH1D2Q8WWB5 315 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 P3H4Q92791 437 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 TADA1Q96BN2 335 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 CENPTQ96BT3 561 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 IMP4Q96G21 291 aaKnown RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 BMFQ96LC9 184 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 LENG8Q96PV6 779 aaPredicted RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 SMIM14Q96QK8 99 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 MCCC1Q96RQ3 725 aaPredicted RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 RTKNQ9BST9 563 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 LZTFL1Q9NQ48 299 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 AASDHPPTQ9NRN7 309 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 B4GALT6Q9UBX8 382 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 COQ6Q9Y2Z9 468 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 TTLL3Q9Y4R7 772 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 PCDHB9Q9Y5E1 797 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 SCN8AQ9UQD0 1980 aa9.86□□□□□ -0.83
CLK3-220ENST00000567992 CNOT1A5YKK6 2376 aaKnown RBP9.86□□□□□ -0.83
CLK3-220ENST00000567992 A0A1W2PQ67 120 aa9.85□□□□□ -0.83
CLK3-220ENST00000567992 TCRBV7S2A1N4TA0A589 114 aa9.85□□□□□ -0.83
CLK3-220ENST00000567992 POM121BA6NF01 834 aa9.85□□□□□ -0.83
CLK3-220ENST00000567992 NPIPB15A6NHN6 443 aaPredicted RBP9.85□□□□□ -0.83
CLK3-220ENST00000567992 TLR4O00206 839 aa9.85□□□□□ -0.83
CLK3-220ENST00000567992 NEMP1O14524 444 aa9.85□□□□□ -0.83
CLK3-220ENST00000567992 KCNK3O14649 394 aa9.85□□□□□ -0.83
CLK3-220ENST00000567992 CER1O95813 267 aa9.85□□□□□ -0.83
CLK3-220ENST00000567992 ZNF883P0CG24 379 aa9.85□□□□□ -0.83
CLK3-220ENST00000567992 CD59P13987 128 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms