RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 TMEM52BQ4KMG9 183 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 CCDC157Q569K6 752 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 LRRC73Q5JTD7 316 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 CCDC122Q5T0U0 273 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 TMCO4Q5TGY1 634 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 ERAP2Q6P179 960 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 ALKBH5Q6P6C2 394 aaKnown RBP4.83□□□□□ -1.64
CLK3-219ENST00000567805 TMCO3Q6UWJ1 677 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 POLNQ7Z5Q5 900 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 SRLQ86TD4 932 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 PROSER1Q86XN7 944 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 NPWQ8N729 165 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 FAM181AQ8N9Y4 354 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 NETO2Q8NC67 525 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 TSEN2Q8NCE0 465 aaKnown RBP4.83□□□□□ -1.64
CLK3-219ENST00000567805 ZNF548Q8NEK5 533 aaPredicted RBP4.83□□□□□ -1.64
CLK3-219ENST00000567805 BTN2A2Q8WVV5 523 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 RFFLQ8WZ73 363 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 HSPH1Q92598 858 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 POM121Q96HA1 1249 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 TBATAQ96M53 351 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 CSPG4P5Q96PW8 444 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 PSKH2Q96QS6 385 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 WRAP53Q9BUR4 548 aaKnown RBP4.83□□□□□ -1.64
CLK3-219ENST00000567805 NUP85Q9BW27 656 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 XPO4Q9C0E2 1151 aaKnown RBP4.83□□□□□ -1.64
CLK3-219ENST00000567805 CCDC86Q9H6F5 360 aaKnown RBP4.83□□□□□ -1.64
CLK3-219ENST00000567805 USP29Q9HBJ7 922 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 PCDH12Q9NPG4 1184 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 EVA1BQ9NVM1 165 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 UCKL1Q9NWZ5 548 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 DNAJC28Q9NX36 388 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 NCKIPSDQ9NZQ3 722 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 RCOR3Q9P2K3 495 aaPredicted RBP4.83□□□□□ -1.64
CLK3-219ENST00000567805 DKK4Q9UBT3 224 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 SEPT3Q9UH03 358 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 IP6K2Q9UHH9 426 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 IPO11Q9UI26 975 aaKnown RBP4.83□□□□□ -1.64
CLK3-219ENST00000567805 LCMT1Q9UIC8 334 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 CSNK1G3Q9Y6M4 447 aa4.83□□□□□ -1.64
CLK3-219ENST00000567805 ZFC3H1O60293 1989 aaKnown RBP4.82□□□□□ -1.64
CLK3-219ENST00000567805 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.82□□□□□ -1.64
CLK3-219ENST00000567805 A0A1W2PQ67 120 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 CFAP69A5D8W1 941 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 FAM149AA5PLN7 773 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 TRABD2BA6NFA1 517 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 TMEM110-MUSTN1A8MSY1 372 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 K7ESM1 405 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 TAF4O00268 1085 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 TPP1O14773 563 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 FFAR2O15552 330 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 AQP9O43315 295 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 BUB1BO60566 1050 aaPredicted RBP4.82□□□□□ -1.64
CLK3-219ENST00000567805 MAFKO60675 156 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 MMP20O60882 483 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 SOCS5O75159 536 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 GP1BAP07359 652 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 TPM1P09493 284 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 H2AFZP0C0S5 128 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 ELFN1P0C7U0 828 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 GIMD1P0DJR0 217 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 C6P13671 934 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 JUPP14923 745 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 JUNDP17535 347 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 ITIH2P19823 946 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 AMPD1P23109 780 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 NFKBIAP25963 317 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 HSPA9P38646 679 aaKnown RBP4.82□□□□□ -1.64
CLK3-219ENST00000567805 RGRP47804 291 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 LIG3P49916 1009 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 PEX5P50542 639 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 SCNN1BP51168 640 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 DUSP3P51452 185 aaPredicted RBP4.82□□□□□ -1.64
CLK3-219ENST00000567805 THOP1P52888 689 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 CDH6P55285 790 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 AP1S1P61966 158 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 DAB2P98082 770 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 INSM1Q01101 510 aaPredicted RBP4.82□□□□□ -1.64
CLK3-219ENST00000567805 BCL2L1Q07817 233 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 SLC10A7Q0GE19 358 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 EIF2B5Q13144 721 aaKnown RBP4.82□□□□□ -1.64
CLK3-219ENST00000567805 PDE1CQ14123 709 aaPredicted RBP4.82□□□□□ -1.64
CLK3-219ENST00000567805 KRT81Q14533 505 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 ZNF235Q14590 738 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 LBRQ14739 615 aaKnown RBP4.82□□□□□ -1.64
CLK3-219ENST00000567805 LRRC14Q15048 493 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 SLC18A3Q16572 532 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 HADHQ16836 314 aaKnown RBP4.82□□□□□ -1.64
CLK3-219ENST00000567805 ZNF542PQ5EBM4 170 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 RALGPS1Q5JS13 557 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 HES3Q5TGS1 186 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 SPECC1LQ69YQ0 1117 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 TXNRD3NBQ6F5E7 133 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 ZCCHC8Q6NZY4 707 aaKnown RBP4.82□□□□□ -1.64
CLK3-219ENST00000567805 MACC1Q6ZN28 852 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 ARHGAP36Q6ZRI8 547 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 H2AFVQ71UI9 128 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 LAPTM4BQ86VI4 370 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 CAMK1DQ8IU85 385 aa4.82□□□□□ -1.64
CLK3-219ENST00000567805 LRRC49Q8IUZ0 686 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms