RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 THSD1Q9NS62 852 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 PNMA8BQ9ULN7 279 aaPredicted RBP18.88■□□□□ 0.61
CLN3-218ENST00000565688 DOLKQ9UPQ8 538 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 ATP8A1Q9Y2Q0 1164 aa18.88■□□□□ 0.61
CLN3-218ENST00000565688 CFAP69A5D8W1 941 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 TMEM191CA6NGB0 347 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 LRRC53A6NM62 1247 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 PRPSAP2O60256 369 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 GZMAP12544 262 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 CTSEP14091 401 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 MMP12P39900 470 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 LIG3P49916 1009 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 HK3P52790 923 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 UCNP55089 124 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 RFTN1Q14699 578 aaPredicted RBP18.87■□□□□ 0.61
CLN3-218ENST00000565688 NFATC4Q14934 902 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 ASIC2Q16515 512 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 FILIP1LQ4L180 1135 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 BROXQ5VW32 411 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 AFMIDQ63HM1 303 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 RFX8Q6ZV50 586 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 GPR155Q7Z3F1 870 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 SRLQ86TD4 932 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 CAMK1DQ8IU85 385 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 LSM14AQ8ND56 463 aaKnown RBP18.87■□□□□ 0.61
CLN3-218ENST00000565688 BPIFA3Q9BQP9 254 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 SNRNP25Q9BV90 132 aaKnown RBP18.87■□□□□ 0.61
CLN3-218ENST00000565688 CINPQ9BW66 212 aaPredicted RBP18.87■□□□□ 0.61
CLN3-218ENST00000565688 CLPBQ9H078 707 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 PCSK1NQ9UHG2 260 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 PADI4Q9UM07 663 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 COQ6Q9Y2Z9 468 aa18.87■□□□□ 0.61
CLN3-218ENST00000565688 TEX51A0A1B0GUA7 166 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 ATXN7O15265 892 aaPredicted RBP18.86■□□□□ 0.61
CLN3-218ENST00000565688 TEX33O43247 280 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 BUB1BO60566 1050 aaPredicted RBP18.86■□□□□ 0.61
CLN3-218ENST00000565688 RASGRP1O95267 797 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 RBMS1P29558 406 aaKnown RBP18.86■□□□□ 0.61
CLN3-218ENST00000565688 HCAR3P49019 387 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 POLR2LP62875 67 aaKnown RBP18.86■□□□□ 0.61
CLN3-218ENST00000565688 NSUN2Q08J23 767 aaKnown RBP eCLIP18.86■□□□□ 0.61
CLN3-218ENST00000565688 MTM1Q13496 603 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 INPP5AQ14642 412 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 CA9Q16790 459 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 PERM1Q5SV97 790 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 HID1Q8IV36 788 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 ARL10Q8N8L6 244 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 KCTD15Q96SI1 283 aaPredicted RBP18.86■□□□□ 0.61
CLN3-218ENST00000565688 APOOQ9BUR5 198 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 EDEM3Q9BZQ6 932 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 SP110Q9HB58 689 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 ASCL3Q9NQ33 180 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 AIPL1Q9NZN9 384 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 SATB2Q9UPW6 733 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 SCINQ9Y6U3 715 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 MGAQ8IWI9 3026 aa18.86■□□□□ 0.61
CLN3-218ENST00000565688 SMTNL1A8MU46 457 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 ATMINO43313 823 aaPredicted RBP18.85■□□□□ 0.61
CLN3-218ENST00000565688 FTLP02792 175 aaPredicted RBP18.85■□□□□ 0.61
CLN3-218ENST00000565688 ERCC2P18074 760 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 MIPP30301 263 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 BCL2L1Q07817 233 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 IL10RBQ08334 325 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 ALG11Q2TAA5 492 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 ANO6Q4KMQ2 910 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 PPP6R3Q5H9R7 873 aaPredicted RBP18.85■□□□□ 0.61
CLN3-218ENST00000565688 C3orf38Q5JPI3 329 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 ENPP7Q6UWV6 458 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 GKN2Q86XP6 184 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 ARHGAP12Q8IWW6 846 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 LZTR1Q8N653 840 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 ARFGAP1Q8N6T3 406 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 TSEN2Q8NCE0 465 aaKnown RBP18.85■□□□□ 0.61
CLN3-218ENST00000565688 TSACCQ96A04 125 aaPredicted RBP18.85■□□□□ 0.61
CLN3-218ENST00000565688 TRIM11Q96F44 468 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 ATXN7L3BQ96GX2 97 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 PEBP4Q96S96 227 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 CCDC3Q9BQI4 270 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 DPH1Q9BZG8 443 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 HAUS4Q9H6D7 363 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 KLQ9UEF7 1012 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 PCDHGA8Q9Y5G5 932 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 ENTPD2Q9Y5L3 495 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 CFAP46Q8IYW2 2715 aa18.85■□□□□ 0.61
CLN3-218ENST00000565688 A0A1W2PQC6 194 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 DFFAO00273 331 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 MYBL1P10243 752 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 PRKCIP41743 596 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 MLLT3P42568 568 aaPredicted RBP18.84■□□□□ 0.61
CLN3-218ENST00000565688 RGRP47804 291 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 RENBPP51606 427 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 TMPRSS3P57727 454 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 SRP54P61011 504 aaKnown RBP18.84■□□□□ 0.61
CLN3-218ENST00000565688 CXADRP78310 365 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 SPIDRQ14159 915 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 CRTC1Q6UUV9 634 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 ZNF571Q7Z3V5 609 aaPredicted RBP18.84■□□□□ 0.61
CLN3-218ENST00000565688 ZSWIM9Q86XI8 627 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 PAF1Q8N7H5 531 aa18.84■□□□□ 0.61
CLN3-218ENST00000565688 OR6C4Q8NGE1 309 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms