RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 RARAP10276 462 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 SEMG2Q02383 582 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 LBRQ14739 615 aaKnown RBP22.64■■□□□ 1.21
CLN3-215ENST00000565236 WSCD2Q2TBF2 565 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 DEFB133Q30KQ1 61 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 PRRT3Q5FWE3 981 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 TMCO4Q5TGY1 634 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 TMCO3Q6UWJ1 677 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 MACC1Q6ZN28 852 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 ZSWIM9Q86XI8 627 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 TP53INP2Q8IXH6 220 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 PHACTR4Q8IZ21 702 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 RBFAQ8N0V3 343 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 HNRNPLLQ8WVV9 542 aaKnown RBP22.64■■□□□ 1.21
CLN3-215ENST00000565236 ZNF599Q96NL3 588 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 PSKH2Q96QS6 385 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 NUP85Q9BW27 656 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 ABCG4Q9H172 646 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 SALL4Q9UJQ4 1053 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 ANAPC7Q9UJX3 599 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 ITPR1Q14643 2758 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 CELSR3Q9NYQ7 3312 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 ADAMTS20P59510 1910 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 LY6G6EA0A0G2JKS1 128 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 TMEM110-MUSTN1A8MSY1 372 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 PRKCGP05129 697 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 CYP1A2P05177 515 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 MMP12P39900 470 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 PEX5P50542 639 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 PPARDQ03181 441 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 SLC10A7Q0GE19 358 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 C1orf61Q13536 156 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 RTP5Q14D33 572 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 CCDC122Q5T0U0 273 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 ALKBH5Q6P6C2 394 aaKnown RBP22.63■■□□□ 1.21
CLN3-215ENST00000565236 NIPA2Q8N8Q9 360 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 TEKT4Q8WW24 435 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 BTBD6Q96KE9 485 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 CSPG4P5Q96PW8 444 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 TCEAL2Q9H3H9 227 aaPredicted RBP22.63■■□□□ 1.21
CLN3-215ENST00000565236 ETNK2Q9NVF9 386 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 U3KQA8 63 aa22.63■■□□□ 1.21
CLN3-215ENST00000565236 LRRK1Q38SD2 2015 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 CPED1A4D0V7 1026 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 MYO1FO00160 1098 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 MUSKO15146 869 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 GCATO75600 419 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 HTR1BP28222 390 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 BLKP51451 505 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 ADKP55263 362 aaKnown RBP22.62■■□□□ 1.21
CLN3-215ENST00000565236 AP1S1P61966 158 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 ZNF235Q14590 738 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 INPP5AQ14642 412 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 COL28A1Q2UY09 1125 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 IFI44Q8TCB0 444 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 GLMNQ92990 594 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 ECHDC3Q96DC8 303 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 TBATAQ96M53 351 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 APOOQ9BUR5 198 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 SCUBE2Q9NQ36 999 aa22.62■■□□□ 1.21
CLN3-215ENST00000565236 PNMA8BQ9ULN7 279 aaPredicted RBP22.62■■□□□ 1.21
CLN3-215ENST00000565236 ANKRD36A6QL64 1941 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP22.61■■□□□ 1.21
CLN3-215ENST00000565236 CFAP69A5D8W1 941 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 GYPCP04921 128 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 TPM3P06753 285 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 ANXA6P08133 673 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 CASP14P31944 242 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 SSR1P43307 286 aaKnown RBP22.61■■□□□ 1.21
CLN3-215ENST00000565236 AGERQ15109 404 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 CDKN3Q16667 212 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 ZSCAN23Q3MJ62 389 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 TXNRD3NBQ6F5E7 133 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 MAPK15Q8TD08 544 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 NSMCE1Q8WV22 266 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 LRRC61Q9BV99 259 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 PCDH18Q9HCL0 1135 aa22.61■■□□□ 1.21
CLN3-215ENST00000565236 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.61■■□□□ 1.21
CLN3-215ENST00000565236 LMO7DNF2Z398 122 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 SERPINB6P35237 376 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 HSPA9P38646 679 aaKnown RBP22.6■■□□□ 1.21
CLN3-215ENST00000565236 RPIAP49247 311 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 KRT81Q14533 505 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 NR0B2Q15466 257 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 HADHQ16836 314 aaKnown RBP22.6■■□□□ 1.21
CLN3-215ENST00000565236 CDCP2Q5VXM1 449 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 ENPP7Q6UWV6 458 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 HID1Q8IV36 788 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 BBS5Q8N3I7 341 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 TSACCQ96A04 125 aaPredicted RBP22.6■■□□□ 1.21
CLN3-215ENST00000565236 DCBLD2Q96PD2 775 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 DEPDC7Q96QD5 511 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 OR1A2Q9Y585 309 aa22.6■■□□□ 1.21
CLN3-215ENST00000565236 ASXL3Q9C0F0 2248 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 A0A087WV48 116 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 TTC24A2A3L6 582 aaPredicted RBP22.59■■□□□ 1.21
CLN3-215ENST00000565236 TRAFD1O14545 582 aaPredicted RBP22.59■■□□□ 1.21
CLN3-215ENST00000565236 YY2O15391 372 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 MAFKO60675 156 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 RECQL5O94762 991 aaPredicted RBP22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms