RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 BRD8Q9H0E9 1235 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 DUS2Q9NX74 493 aaKnown RBP13.29□□□□□ -0.28
CLN3-210ENST00000563874 AAR2Q9Y312 384 aaKnown RBP13.29□□□□□ -0.28
CLN3-210ENST00000563874 TCAF1Q9Y4C2 921 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 IPPQ9Y573 584 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 NRP2O60462 931 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 SRP72O76094 671 aaKnown RBP13.28□□□□□ -0.28
CLN3-210ENST00000563874 CLIC3O95833 236 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 AFF1P51825 1210 aaKnown RBP13.28□□□□□ -0.28
CLN3-210ENST00000563874 YBX1P67809 324 aaKnown RBP13.28□□□□□ -0.28
CLN3-210ENST00000563874 PRKCQQ04759 706 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 LPIN1Q14693 890 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 MAP7D1Q3KQU3 841 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 TECRLQ5HYJ1 363 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 NEPROQ6NW34 567 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 DHFR2Q86XF0 187 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 ZNF786Q8N393 782 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 TOP6BLQ8N6T0 577 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 OR6J1Q8NGC5 347 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 RIN3Q8TB24 985 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 SH3RF2Q8TEC5 729 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 RPL10LQ96L21 214 aaKnown RBP13.28□□□□□ -0.28
CLN3-210ENST00000563874 C3orf30Q96M34 536 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 PNPLA3Q9NST1 481 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 CD300AQ9UGN4 299 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 PADI4Q9UM07 663 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 TCRBV3S1A0A5B6 114 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 TMX2-CTNND1H3BSU7 103 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 XPOTO43592 962 aaKnown RBP13.28□□□□□ -0.28
CLN3-210ENST00000563874 SUPT7LO94864 414 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 SNAI1O95863 264 aaPredicted RBP13.28□□□□□ -0.28
CLN3-210ENST00000563874 ADRM1Q16186 407 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 CYHR1Q6ZMK1 362 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 RETREG3Q86VR2 466 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 CPNE9Q8IYJ1 553 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 CBR4Q8N4T8 237 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 PBXIP1Q96AQ6 731 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 ALG9Q9H6U8 611 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 MEAF6Q9HAF1 191 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 GLOD4Q9HC38 313 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 EBF1Q9UH73 591 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 KCNC1P48547 511 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 CDK9P50750 372 aaKnown RBP13.28□□□□□ -0.28
CLN3-210ENST00000563874 AIF1P55008 147 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 MAPRE2Q15555 327 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 INTS6LQ5JSJ4 861 aaKnown RBP13.28□□□□□ -0.28
CLN3-210ENST00000563874 UBXN11Q5T124 520 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 C2CD4AQ8NCU7 369 aaPredicted RBP13.28□□□□□ -0.28
CLN3-210ENST00000563874 SENP8Q96LD8 212 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 TRAF6Q9Y4K3 522 aa13.28□□□□□ -0.28
CLN3-210ENST00000563874 NR5A2O00482 541 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 PPP6CO00743 305 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 CXCL11O14625 94 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 PTGESO14684 152 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 HLA-DQB2P05538 268 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 KCNE1P15382 129 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 CHRM3P20309 590 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 ALDH3B2P48448 385 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 CXCR3P49682 368 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 CAPRIN1Q14444 709 aaKnown RBP13.27□□□□□ -0.28
CLN3-210ENST00000563874 SNX17Q15036 470 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 KIF19Q2TAC6 998 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 ZNF792Q3KQV3 632 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 NHSL2Q5HYW2 709 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 KLHL35Q6PF15 583 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 POTEHQ6S545 545 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 SPPL2CQ8IUH8 684 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 CLVS1Q8IUQ0 354 aaPredicted RBP13.27□□□□□ -0.28
CLN3-210ENST00000563874 FUNDC1Q8IVP5 155 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 SDR16C5Q8N3Y7 309 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 DCPSQ96C86 337 aaKnown RBP13.27□□□□□ -0.28
CLN3-210ENST00000563874 SLC25A23Q9BV35 468 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 VTA1Q9NP79 307 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 CNGB3Q9NQW8 809 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 RBM22Q9NW64 420 aaKnown RBP eCLIP13.27□□□□□ -0.28
CLN3-210ENST00000563874 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.27□□□□□ -0.28
CLN3-210ENST00000563874 TMEM181Q9P2C4 612 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 NUDT5Q9UKK9 219 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 DSEQ9UL01 958 aa13.27□□□□□ -0.28
CLN3-210ENST00000563874 A0A087X1B8 175 aa13.27□□□□□ -0.29
CLN3-210ENST00000563874 DDNO94850 711 aaPredicted RBP13.27□□□□□ -0.29
CLN3-210ENST00000563874 ALDOCP09972 364 aaKnown RBP13.27□□□□□ -0.29
CLN3-210ENST00000563874 SMIM10L2AP0DMW4 78 aa13.27□□□□□ -0.29
CLN3-210ENST00000563874 SMIM10L2BP0DMW5 78 aa13.27□□□□□ -0.29
CLN3-210ENST00000563874 PSMD8P48556 350 aa13.27□□□□□ -0.29
CLN3-210ENST00000563874 DNAJB13P59910 316 aa13.27□□□□□ -0.29
CLN3-210ENST00000563874 SAMD4BQ5PRF9 694 aaKnown RBP13.27□□□□□ -0.29
CLN3-210ENST00000563874 TWF2Q6IBS0 349 aaKnown RBP13.27□□□□□ -0.29
CLN3-210ENST00000563874 DUS1LQ6P1R4 473 aaKnown RBP13.27□□□□□ -0.29
CLN3-210ENST00000563874 PIM3Q86V86 326 aa13.27□□□□□ -0.29
CLN3-210ENST00000563874 ERI1Q8IV48 349 aaKnown RBP13.27□□□□□ -0.29
CLN3-210ENST00000563874 ARHGAP12Q8IWW6 846 aa13.27□□□□□ -0.29
CLN3-210ENST00000563874 RYBPQ8N488 228 aaPredicted RBP13.27□□□□□ -0.29
CLN3-210ENST00000563874 SMG8Q8ND04 991 aaKnown RBP13.27□□□□□ -0.29
CLN3-210ENST00000563874 EFHD1Q9BUP0 239 aa13.27□□□□□ -0.29
CLN3-210ENST00000563874 SLC39A8Q9C0K1 460 aa13.27□□□□□ -0.29
CLN3-210ENST00000563874 CLK4Q9HAZ1 481 aaKnown RBP13.27□□□□□ -0.29
CLN3-210ENST00000563874 EML4Q9HC35 981 aaKnown RBP13.27□□□□□ -0.29
CLN3-210ENST00000563874 MRPL40Q9NQ50 206 aaKnown RBP13.27□□□□□ -0.29
CLN3-210ENST00000563874 TSC2P49815 1807 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms