RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 FER1L6-AS2Q96M78 137 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TEPSINQ96N21 525 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 PLEKHG4BQ96PX9 1271 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 SIN3AQ96ST3 1273 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 GAD1Q99259 594 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 HGH1Q9BTY7 390 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TUBB6Q9BUF5 446 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 KIFC3Q9BVG8 833 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 CCDC106Q9BWC9 280 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 C1QTNF5Q9BXJ0 243 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 MRPL1Q9BYD6 325 aaKnown RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 FAM129AQ9BZQ8 928 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 HIPK3Q9H422 1215 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 SLC2A4RGQ9NR83 387 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 LRIT1Q9P2V4 623 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 ANAPC2Q9UJX6 822 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 R3HDM2Q9Y2K5 976 aaKnown RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 LOC102723996A0A087X1L8 192 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 BICDL2A1A5D9 508 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 TYW5A2RUC4 315 aaKnown RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 DDTLA6NHG4 134 aaPredicted RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 LRRC72A6NJI9 287 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 BTBD19C9JJ37 291 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 PI4K2BG5E9Z4 385 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 H3BQ06 376 aaPredicted RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 EBAG9O00559 213 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 ATP2C2O75185 946 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 AVILO75366 819 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 CD63P08962 238 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 CCDC175P0C221 793 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 MMP9P14780 707 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 ZNF182P17025 639 aaPredicted RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 ATP5DP30049 168 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 RYKP34925 604 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 PTGER1P34995 402 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 GP5P40197 560 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 CLCN5P51795 746 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 PNLIPRP2P54317 469 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 MRPS5P82675 430 aaKnown RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 ALCAMQ13740 583 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 IL11RAQ14626 422 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 NAB2Q15742 525 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 C15orf59Q2T9L4 293 aaPredicted RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 LETM2Q2VYF4 491 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 PCGF3Q3KNV8 242 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 KIAA1755Q5JYT7 1200 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 SPDYAQ5MJ70 313 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 LY6G5CQ5SRR4 150 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 PMS2CLQ68D20 193 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 CES5AQ6NT32 575 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 RBM44Q6ZP01 1051 aaKnown RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 QSOX2Q6ZRP7 698 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 SEPT14Q6ZU15 432 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 CHST3Q7LGC8 479 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 CCDC91Q7Z6B0 441 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 MRGPREQ86SM8 312 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 NOXA1Q86UR1 476 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 CCDC170Q8IYT3 715 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 FAM185AQ8N0U4 392 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 MMP21Q8N119 569 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 ZCCHC9Q8N567 271 aaKnown RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 MSANTD4Q8NCY6 345 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 CHST13Q8NET6 341 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 OR4N2Q8NGD1 307 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 KIF18AQ8NI77 898 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 HDAC7Q8WUI4 952 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 CACTINQ8WUQ7 758 aaKnown RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 NSMCE1Q8WV22 266 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 SGCDQ92629 289 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 KAT2BQ92831 832 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 SECISBP2LQ93073 1101 aaKnown RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 P2RY11Q96G91 374 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 MXRA8Q9BRK3 442 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 NAA11Q9BSU3 229 aaPredicted RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 BDH2Q9BUT1 245 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 TM2D2Q9BX73 214 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 MRPL9Q9BYD2 267 aaKnown RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 C2orf40Q9H1Z8 148 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 OSGEPL1Q9H4B0 414 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 ACTR5Q9H9F9 607 aaPredicted RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 SLC28A3Q9HAS3 691 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 WDR6Q9NNW5 1121 aaKnown RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 BPIFA1Q9NP55 256 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 MLXIPLQ9NP71 852 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 MTRRQ9UBK8 725 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 CMAHPQ9Y471 501 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 LSM4Q9Y4Z0 139 aaKnown RBP3.24□□□□□ -1.89
TRAV28-201ENST00000557548 MST1RQ04912 1400 aa3.24□□□□□ -1.89
TRAV28-201ENST00000557548 UTYO14607 1347 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 SALL3Q9BXA9 1300 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 LOC100509620A0A075B734 347 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 A0A1W2PR77 199 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 SLC22A23A1A5C7 686 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 KLRF2D3W0D1 207 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 H7C1Q1 480 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 TADA2AO75478 443 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 TMCC1O94876 653 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 HNRNPCP07910 306 aaKnown RBP eCLIP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 HKR1P10072 659 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms