RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 RPS6P62753 249 aaKnown RBP13.9□□□□□ -0.18
SHMT2-226ENST00000556825 TEKQ02763 1124 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 PTP4A2Q12974 167 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 CBX2Q14781 532 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-226ENST00000556825 TMEM236Q5W0B7 351 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 BRAT1Q6PJG6 821 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 USP51Q70EK9 711 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 CREB3L2Q70SY1 520 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 TMPRSS9Q7Z410 1059 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 MRPL10Q7Z7H8 261 aaKnown RBP13.9□□□□□ -0.18
SHMT2-226ENST00000556825 ADGRF2Q8IZF7 708 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 LRRC47Q8N1G4 583 aaKnown RBP13.9□□□□□ -0.18
SHMT2-226ENST00000556825 FAM83FQ8NEG4 500 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-226ENST00000556825 OR13J1Q8NGT2 312 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 DYNC2LI1Q8TCX1 351 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 DEDD2Q8WXF8 326 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 PBXIP1Q96AQ6 731 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 NXNL1Q96CM4 212 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 CNDP1Q96KN2 507 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 TEKT5Q96M29 485 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 PCDHB18PQ96TA0 734 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 ISCA1Q9BUE6 129 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 UCK2Q9BZX2 261 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 CYB5R1Q9UHQ9 305 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 SLC45A1Q9Y2W3 748 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 LRP5O75197 1615 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 PRR23AA6NEV1 266 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 OR6C65A6NJZ3 312 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 I3L521 148 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 TIPRLO75663 272 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 WEE2P0C1S8 567 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 OSBPP22059 807 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 ERP29P30040 261 aaKnown RBP13.89□□□□□ -0.19
SHMT2-226ENST00000556825 CRHR1P34998 444 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 CCNA1P78396 465 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 SLC10A2Q12908 348 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-226ENST00000556825 ORC2Q13416 577 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-226ENST00000556825 FASTKD1Q53R41 847 aaKnown RBP13.89□□□□□ -0.19
SHMT2-226ENST00000556825 KRT79Q5XKE5 535 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 DRICH1Q6PGQ1 229 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-226ENST00000556825 UNC5DQ6UXZ4 953 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 SLC26A11Q86WA9 606 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 RHPN2Q8IUC4 686 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 C2orf69Q8N8R5 385 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 ZBTB44Q8NCP5 570 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 FAM156AQ8NDB6 213 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 NDNFQ8TB73 568 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 KLHL6Q8WZ60 621 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 MUL1Q969V5 352 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 MBOAT7Q96N66 472 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 BDH2Q9BUT1 245 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 ABCG4Q9H172 646 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 ACAD9Q9H845 621 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 ZFP14Q9HCL3 533 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 TOPORSQ9NS56 1045 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-226ENST00000556825 POLR3BQ9NW08 1133 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-226ENST00000556825 GABBR1Q9UBS5 961 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 APEX2Q9UBZ4 518 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 TMPRSS11EQ9UL52 423 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 FARP1Q9Y4F1 1045 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-226ENST00000556825 RREB1Q92766 1687 aa13.89□□□□□ -0.19
SHMT2-226ENST00000556825 KPNA5O15131 536 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 XYLBO75191 536 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 RFPL1O75677 317 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 VAPBO95292 243 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 RBP1P09455 135 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 PLA2G4BP0C869 781 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 ACADMP11310 421 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 CD1EP15812 388 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 ATP2B4P23634 1241 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 GNPDA1P46926 289 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 AP1S2P56377 157 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 ART3Q13508 389 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 NFIL3Q16649 462 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 KNOP1Q1ED39 458 aaKnown RBP13.88□□□□□ -0.19
SHMT2-226ENST00000556825 ZBTB37Q5TC79 503 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 NXNL2Q5VZ03 156 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 NSMFQ6X4W1 530 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 USP50Q70EL3 339 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-226ENST00000556825 MAGEB6Q8N7X4 407 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 MSANTD3Q96H12 275 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 HSFY1Q96LI6 401 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 TTPALQ9BTX7 342 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 C9orf16Q9BUW7 83 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 ALOXE3Q9BYJ1 711 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 CCDC59Q9P031 241 aaKnown RBP13.88□□□□□ -0.19
SHMT2-226ENST00000556825 PRKAG2Q9UGJ0 569 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 DRG1Q9Y295 367 aaKnown RBP13.88□□□□□ -0.19
SHMT2-226ENST00000556825 CNTNAP1P78357 1384 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 PDXKO00764 312 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 CAPN5O15484 640 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-226ENST00000556825 SSX5O60225 188 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 CCNE2O96020 404 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 FGF3P11487 239 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-226ENST00000556825 AKR1B1P15121 316 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 CYP11B1P15538 503 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 ZNF3P17036 446 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 PSMD8P48556 350 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 SCNN1GP51170 649 aa13.88□□□□□ -0.19
SHMT2-226ENST00000556825 CSTF3Q12996 717 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms