RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	EMC1	Q8N766	993 aa		12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	FAM46D	Q8NEK8	389 aa		12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	TBC1D31	Q96DN5	1066 aa		12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	HMCES	Q96FZ2	354 aa		12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	WDR92	Q96MX6	357 aa		12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	GEMIN8	Q9NWZ8	242 aa	Known RBP	12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	AKAP7	Q9P0M2	348 aa	Predicted RBP	12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	LRIT1	Q9P2V4	623 aa		12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	SEPT3	Q9UH03	358 aa		12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	DGKB	Q9Y6T7	804 aa		12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	RNF215	Q9Y6U7	377 aa		12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	BSN	Q9UPA5	3926 aa		12.77	□□□□□ -0.37
SHMT2-223	ENST00000556689	C9orf172	C9J069	976 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	LRIG2	O94898	1065 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	WT1	P19544	449 aa	Predicted RBP	12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	ETV5	P41161	510 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	RHOA	P61586	193 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	RAPGEF1	Q13905	1077 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	UGP2	Q16851	508 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	C15orf59	Q2T9L4	293 aa	Predicted RBP	12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	CCDC14	Q49A88	953 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	RAB6C	Q53S08	254 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	CERCAM	Q5T4B2	595 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	SPRED1	Q7Z699	444 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	NETO2	Q8NC67	525 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	RXFP2	Q8WXD0	754 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	NCAPG	Q9BPX3	1015 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	MAGEB5	Q9BZ81	275 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	B3GNT4	Q9C0J1	378 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	RAB6C	Q9H0N0	254 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	DPEP2	Q9H4A9	486 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	SUV39H2	Q9H5I1	410 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	PCDH12	Q9NPG4	1184 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	METTL5	Q9NRN9	209 aa	Known RBP	12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	FOXJ2	Q9P0K8	574 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	DAAM1	Q9Y4D1	1078 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	HECTD1	Q9ULT8	2610 aa		12.76	□□□□□ -0.37
SHMT2-223	ENST00000556689	INSIG1	O15503	277 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	SPTA1	P02549	2419 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	PCCB	P05166	539 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	MME	P08473	750 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	SDC4	P31431	198 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	LIG3	P49916	1009 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	TLE1	Q04724	770 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	MTM1	Q13496	603 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	HLTF	Q14527	1009 aa	Known RBP eCLIP	12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	GRM3	Q14832	879 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	CLCA4	Q14CN2	919 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	AGER	Q15109	404 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	MAN2A1	Q16706	1144 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	C14orf28	Q4W4Y0	310 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	PHF19	Q5T6S3	580 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	NAA35	Q5VZE5	725 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	DPY19L2P1	Q6NXN4	242 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	ERAP2	Q6P179	960 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	NYAP1	Q6ZVC0	841 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	STRADA	Q7RTN6	431 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	NOP9	Q86U38	636 aa	Known RBP	12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	PIM3	Q86V86	326 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	NAV2	Q8IVL1	2488 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	SLITRK4	Q8IW52	837 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	OR56A4	Q8NGH8	313 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	HTR3C	Q8WXA8	447 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	SEMA6C	Q9H3T2	930 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	NEU3	Q9UQ49	428 aa		12.75	□□□□□ -0.37
SHMT2-223	ENST00000556689	TMEM202	A6NGA9	273 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	CACNB4	O00305	520 aa	Predicted RBP	12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	TNFRSF10C	O14798	259 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	NUDT21	O43809	227 aa	Known RBP	12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	PIGN	O95427	931 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	KEL	P23276	732 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	YBEY	P58557	167 aa	Predicted RBP	12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	NOMO3	P69849	1222 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	CYTH1	Q15438	398 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	TPD52L1	Q16890	204 aa	Predicted RBP	12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	VWA3B	Q502W6	1294 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	CFAP58	Q5T655	872 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	KLHDC7A	Q5VTJ3	777 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	TMPRSS9	Q7Z410	1059 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	PHLDB2	Q86SQ0	1253 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	DNAAF5	Q86Y56	855 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	RTL3	Q8N8U3	475 aa	Known RBP	12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	GPT2	Q8TD30	523 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	OR1E3	Q8WZA6	343 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	CENPI	Q92674	756 aa	Predicted RBP	12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	PDXP	Q96GD0	296 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	ZNF641	Q96N77	438 aa	Predicted RBP	12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	KLC2	Q9H0B6	622 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	ADNP	Q9H2P0	1102 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	NDST4	Q9H3R1	872 aa		12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	NOL6	Q9H6R4	1146 aa	Known RBP	12.74	□□□□□ -0.37
SHMT2-223	ENST00000556689	DOCK4	Q8N1I0	1966 aa		12.73	□□□□□ -0.37
SHMT2-223	ENST00000556689	TSPAN11	A1L157	253 aa		12.73	□□□□□ -0.37
SHMT2-223	ENST00000556689	CFAP69	A5D8W1	941 aa		12.73	□□□□□ -0.37
SHMT2-223	ENST00000556689	C2CD4B	A6NLJ0	364 aa		12.73	□□□□□ -0.37
SHMT2-223	ENST00000556689		B4DGG1	531 aa		12.73	□□□□□ -0.37
SHMT2-223	ENST00000556689	RASA4B	C9J798	803 aa		12.73	□□□□□ -0.37
SHMT2-223	ENST00000556689	STMND1	H3BQB6	276 aa		12.73	□□□□□ -0.37
SHMT2-223	ENST00000556689	ZW10	O43264	779 aa		12.73	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms