RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 DCAF4L2Q8NA75 395 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 GPR150Q8NGU9 434 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 OR6Y1Q8NGX8 325 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 OR6P1Q8NGX9 317 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 NSMCE3Q96MG7 304 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 SIKE1Q9BRV8 207 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 TDRD1Q9BXT4 1180 aaKnown RBP26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 FBXO6Q9NRD1 293 aaPredicted RBP26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 VPS28Q9UK41 221 aa26.48■■□□□ 1.83
CCDC88C-205ENST00000553403 CFAP73A6NFT4 308 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 C2orf71A6NGG8 1288 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 G3V2L1 256 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 PHGDHO43175 533 aaKnown RBP26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 TLL1O43897 1013 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 H2AFYO75367 372 aaKnown RBP26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 RPP40O75818 363 aaKnown RBP26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 CRTAMO95727 393 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 FGF19O95750 216 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 SAT1P21673 171 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 SLC1A6P48664 564 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 MPPE1Q53F39 396 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 PPM1LQ5SGD2 360 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 CNSTQ6PJW8 725 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 TDRD5Q8NAT2 981 aaKnown RBP26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 CORO1BQ9BR76 489 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 C20orf27Q9GZN8 174 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 TXLNGQ9NUQ3 528 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 LHX3Q9UBR4 397 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 RWDD3Q9Y3V2 267 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 KCTD3Q9Y597 815 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 A0A1W2PRU2 124 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 SCAMP3O14828 347 aaKnown RBP26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 DNAJC6O75061 913 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 MYL4P12829 197 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 PSMA3P25788 255 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 CSKP41240 450 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 PRKAA2P54646 552 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 SLC12A2P55011 1212 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 TSNAXIP1Q2TAA8 658 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 PTAR1Q7Z6K3 402 aaPredicted RBP26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 GPATCH11Q8N954 259 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 EXOC2Q96KP1 924 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 TASP1Q9H6P5 420 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 ZNF395Q9H8N7 513 aaPredicted RBP26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 ARL5AQ9Y689 179 aa26.47■■□□□ 1.83
CCDC88C-205ENST00000553403 PRLP01236 227 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 MYL2P10916 166 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 TAS2R39P59534 338 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 PLPP4Q5VZY2 271 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 NCEH1Q6PIU2 408 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 ARID3BQ8IVW6 561 aaPredicted RBP26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 CEP97Q8IW35 865 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 MFN1Q8IWA4 741 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 TSPAN17Q96FV3 270 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 DNAJC1Q96KC8 554 aaKnown RBP26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 TBATAQ96M53 351 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 OMDQ99983 421 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 HEY2Q9UBP5 337 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 VPS51Q9UID3 782 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 ZFP69BQ9UJL9 534 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 RUVBL2Q9Y230 463 aaKnown RBP26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 RAI2Q9Y5P3 530 aa26.46■■□□□ 1.83
CCDC88C-205ENST00000553403 HIDE1A8MVS5 230 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 HGSO14964 777 aaPredicted RBP26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 CCL16O15467 120 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 S1PR4O95977 384 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 ATP5BP06576 529 aaKnown RBP26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 AVPR1AP37288 418 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 EPHA5P54756 1037 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 UBE3AQ05086 875 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 TAF1AQ15573 450 aaPredicted RBP26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 LINGO4Q6UY18 593 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 ZYG11AQ6WRX3 759 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 BBS7Q8IWZ6 715 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 CENPLQ8N0S6 344 aaPredicted RBP26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 SPPL3Q8TCT6 385 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 DDI1Q8WTU0 396 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 SLC22A17Q8WUG5 538 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 KCTD4Q8WVF5 259 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 LBHD1Q9BQE6 289 aaPredicted RBP26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 SLC46A2Q9BY10 475 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 NLE1Q9NVX2 485 aaPredicted RBP26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 ARHGAP26Q9UNA1 814 aa26.45■■□□□ 1.82
CCDC88C-205ENST00000553403 A0A1W2PPC1 479 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 LCHNA4D1U4 455 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 LEFTY2O00292 366 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 AURKAO14965 403 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 ITM2AO43736 263 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 UNC5CO95185 931 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 KLHL2O95198 593 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 GLP2RO95838 553 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 DDX6P26196 483 aaKnown RBP eCLIP26.44■■□□□ 1.825e-6■■■■■ 46.6
CCDC88C-205ENST00000553403 MAGEA10P43363 369 aaPredicted RBP26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 CLCN4P51793 760 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 KPNA2P52292 529 aaKnown RBP26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 ABCE1P61221 599 aaKnown RBP26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 ITGA9Q13797 1035 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 MTDHQ86UE4 582 aaKnown RBP26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 WFDC5Q8TCV5 224 aa26.44■■□□□ 1.82
CCDC88C-205ENST00000553403 PPP4R1Q8TF05 950 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms