RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-215	ENST00000547672	OTUD6B	Q8N6M0	293 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	PCDH20	Q8N6Y1	951 aa	Known RBP	13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	VN1R2	Q8NFZ6	395 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	RDH11	Q8TC12	318 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	BLOC1S5	Q8TDH9	187 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	ZNF707	Q96C28	371 aa	Predicted RBP	13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	FAM111A	Q96PZ2	611 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	AGAP2	Q99490	1192 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	KLF6	Q99612	283 aa	Predicted RBP	13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	TRIM56	Q9BRZ2	755 aa	Known RBP	13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	CPEB1	Q9BZB8	566 aa	Known RBP	13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	UGT1A7	Q9HAW7	530 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	UGT1A10	Q9HAW8	530 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	UGT1A8	Q9HAW9	530 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	PCMTD2	Q9NV79	361 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	NLE1	Q9NVX2	485 aa	Predicted RBP	13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	LHX3	Q9UBR4	397 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	CHKB	Q9Y259	395 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	HS3ST2	Q9Y278	367 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	ACOT9	Q9Y305	439 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	PKP3	Q9Y446	797 aa		13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	USP15	Q9Y4E8	981 aa	Predicted RBP	13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	HELZ	P42694	1942 aa	Known RBP	13.52	□□□□□ -0.25
PTCH1-215	ENST00000547672	ATXN2	Q99700	1313 aa	Known RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	HMX2	A2RU54	273 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	IL1B	P01584	269 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	AHSG	P02765	367 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	ALDOA	P04075	364 aa	Known RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	ATP5B	P06576	529 aa	Known RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	PABPC1	P11940	636 aa	Known RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	STMN1	P16949	149 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	POLR2E	P19388	210 aa	Known RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	FSHR	P23945	695 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	GRK2	P25098	689 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	PML	P29590	882 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	SLC26A3	P40879	764 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	ETV4	P43268	484 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	MAGEA12	P43365	314 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	RECQL	P46063	649 aa	Predicted RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	NRIP1	P48552	1158 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	ECT2L	Q008S8	904 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	RNF187	Q5TA31	235 aa	Predicted RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	ZNF470	Q6ECI4	717 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	AFTPH	Q6ULP2	937 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	LINGO4	Q6UY18	593 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	TMEM184A	Q6ZMB5	413 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	RAPH1	Q70E73	1250 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	GLT6D1	Q7Z4J2	308 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	YTHDF3	Q7Z739	585 aa	Known RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	TMEM25	Q86YD3	366 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	AHI1	Q8N157	1196 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	GBP7	Q8N8V2	638 aa	Predicted RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	CCDC63	Q8NA47	563 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	OR4L1	Q8NH43	312 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	PPP1R14C	Q8TAE6	165 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	ZNF398	Q8TD17	642 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	HDAC10	Q969S8	669 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	MRPL38	Q96DV4	380 aa	Known RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	ZNF641	Q96N77	438 aa	Predicted RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	ELAC2	Q9BQ52	826 aa	Known RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	SNX15	Q9NRS6	342 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	INTS10	Q9NVR2	710 aa	Known RBP	13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	KLHL14	Q9P2G3	628 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	SLC39A10	Q9ULF5	831 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	ARL2BP	Q9Y2Y0	163 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672	PSAT1	Q9Y617	370 aa		13.51	□□□□□ -0.25
PTCH1-215	ENST00000547672		A0A096LPK6	155 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	NEDD8-MDP1	E9PL57	170 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	STX7	O15400	261 aa	Known RBP	13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	CD3EAP	O15446	510 aa	Known RBP	13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	SNX3	O60493	162 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	SNUPN	O95149	360 aa	Known RBP	13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	CSPG5	O95196	566 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	TGDS	O95455	350 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	NFATC1	O95644	943 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	CD160	O95971	181 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	TYR	P14679	529 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	RAB10	P61026	200 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	PDE1C	Q14123	709 aa	Predicted RBP	13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	PDGFRL	Q15198	375 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	SLC5A9	Q2M3M2	681 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	FASTKD1	Q53R41	847 aa	Known RBP	13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	ZNF697	Q5TEC3	545 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	LYPLAL1	Q5VWZ2	237 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	ZDHHC20	Q5W0Z9	365 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	KLC3	Q6P597	504 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	SPATA21	Q7Z572	469 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	CILP2	Q8IUL8	1156 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	APCDD1	Q8J025	514 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	LPCAT1	Q8NF37	534 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	OR2AP1	Q8NGE2	309 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	TTC8	Q8TAM2	541 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	OSCP1	Q8WVF1	389 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	SMARCD2	Q92925	531 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	ZNF778	Q96MU6	729 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	MCMBP	Q9BTE3	642 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	NKX2-4	Q9H2Z4	354 aa		13.5	□□□□□ -0.25
PTCH1-215	ENST00000547672	FAM96A	Q9H5X1	160 aa		13.5	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms