RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 RAB6CQ53S08 254 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 FAM102AQ5T9C2 384 aaPredicted RBP12.95□□□□□ -0.34
USP28-212ENST00000544750 ENPP7Q6UWV6 458 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 FAM131BQ86XD5 332 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 ZNF564Q8TBZ8 553 aaPredicted RBP12.95□□□□□ -0.34
USP28-212ENST00000544750 CMKLR1Q99788 373 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 WRAP53Q9BUR4 548 aaKnown RBP12.95□□□□□ -0.34
USP28-212ENST00000544750 RAB6CQ9H0N0 254 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 EPN3Q9H201 632 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 MAGEH1Q9H213 219 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 SYNCQ9H7C4 482 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 TMEM248Q9NWD8 314 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 FAM72CH0Y354 149 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 FOXN3O00409 490 aaPredicted RBP12.94□□□□□ -0.34
USP28-212ENST00000544750 PNMA6AP0CW24 399 aaPredicted RBP12.94□□□□□ -0.34
USP28-212ENST00000544750 RHOQP17081 205 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 PON1P27169 355 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 MAPK10P53779 464 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 FOXK1P85037 733 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 B4GALNT1Q00973 533 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 HLTFQ14527 1009 aaKnown RBP eCLIP12.94□□□□□ -0.34
USP28-212ENST00000544750 INPP5AQ14642 412 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 LRRC14Q15048 493 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 SKIDA1Q1XH10 827 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 FAM72AQ5TYM5 149 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 FAM72DQ6L9T8 149 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 DPY19L2P1Q6NXN4 242 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 LEKR1Q6ZMV7 388 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 GBP6Q6ZN66 633 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 ARCQ7LC44 396 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 RD3Q7Z3Z2 195 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 FAM72BQ86X60 149 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 Q8N9G6 341 aaPredicted RBP12.94□□□□□ -0.34
USP28-212ENST00000544750 C18orf8Q96DM3 657 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 PDXPQ96GD0 296 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 CFAP57Q96MR6 1250 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 WDR92Q96MX6 357 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 MAGEB5Q9BZ81 275 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 TTYH3Q9C0H2 523 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 SEMA6CQ9H3T2 930 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 KLQ9UEF7 1012 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 OR12D3Q9UGF7 316 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 TUBD1Q9UJT1 453 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 PCDHB11Q9Y5F2 797 aa12.94□□□□□ -0.34
USP28-212ENST00000544750 TSPAN11A1L157 253 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 GTPBP10A4D1E9 387 aaKnown RBP12.93□□□□□ -0.34
USP28-212ENST00000544750 GOLGA6L22H0YM25 854 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 AGRPO00253 132 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 B4GAT1O43505 415 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 KDELR3O43731 214 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 NUDT21O43809 227 aaKnown RBP12.93□□□□□ -0.34
USP28-212ENST00000544750 TMCC1O94876 653 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 TNFP01375 233 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 CCL4P13236 92 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 HTR1BP28222 390 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 SUOXP51687 545 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 EXOC3L4Q17RC7 722 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 C14orf28Q4W4Y0 310 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 C2CD6Q53TS8 623 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 C17orf82Q86X59 251 aaPredicted RBP12.93□□□□□ -0.34
USP28-212ENST00000544750 PTRH1Q86Y79 214 aaKnown RBP12.93□□□□□ -0.34
USP28-212ENST00000544750 FAM71AQ8IYT1 594 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 TMEM35BQ8NCS4 154 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 HCAR2Q8TDS4 363 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 OR1E3Q8WZA6 343 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 NKD1Q969G9 470 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 FUBP1Q96AE4 644 aaKnown RBP12.93□□□□□ -0.34
USP28-212ENST00000544750 GDAP1L1Q96MZ0 367 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 NOL6Q9H6R4 1146 aaKnown RBP12.93□□□□□ -0.34
USP28-212ENST00000544750 LRIT1Q9P2V4 623 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 SEPT3Q9UH03 358 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 DNAI1Q9UI46 699 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 OR1A2Q9Y585 309 aa12.93□□□□□ -0.34
USP28-212ENST00000544750 TMEM202A6NGA9 273 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 ZSCAN5CA6NGD5 496 aaPredicted RBP12.92□□□□□ -0.34
USP28-212ENST00000544750 INSIG1O15503 277 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 LRIG2O94898 1065 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 ERCC5P28715 1186 aaPredicted RBP12.92□□□□□ -0.34
USP28-212ENST00000544750 ADRA1BP35368 520 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 CASRP41180 1078 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 POLE2P56282 527 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 RAD51Q06609 339 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 ELP6Q0PNE2 266 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 KCNAB2Q13303 367 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 MTM1Q13496 603 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 NR1D2Q14995 579 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 IGFBP7Q16270 282 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 INO80DQ53TQ3 878 aaPredicted RBP12.92□□□□□ -0.34
USP28-212ENST00000544750 EFHC2Q5JST6 749 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 BORAQ6PGQ7 559 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 ZNF438Q7Z4V0 828 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 NETO2Q8NC67 525 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 PLA2G15Q8NCC3 412 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 FAM46DQ8NEK8 389 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 PMEPA1Q969W9 287 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 PSMG3-AS1Q96PY0 264 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 KLC2Q9H0B6 622 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 FGF22Q9HCT0 170 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 TMEM63CQ9P1W3 806 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 DNAJC12Q9UKB3 198 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms