RNA–Protein interactions for RNA: ENST00000544738.5

DDX55-212, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 956 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-212ENST00000544738 SPTY2D1-AS1A0A0U1RR47 76 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 POM121BA6NF01 834 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 CDRT15L2A8MXV6 281 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 EEF2KO00418 725 aaKnown RBP16.38■□□□□ 0.21
DDX55-212ENST00000544738 AREL1O15033 823 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 NEBLO76041 1014 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 FAM87AP0C7U9 286 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 MYBL1P10243 752 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 ITGB6P18564 788 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 ABL2P42684 1182 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 ZNF135P52742 658 aaPredicted RBP16.38■□□□□ 0.21
DDX55-212ENST00000544738 NR1I3Q14994 352 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 IQCB1Q15051 598 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 ZNF542PQ5EBM4 170 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 FIGNQ5HY92 759 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 XKR5Q6UX68 686 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 ZNF571Q7Z3V5 609 aaPredicted RBP16.38■□□□□ 0.21
DDX55-212ENST00000544738 PSTKQ8IV42 348 aaKnown RBP16.38■□□□□ 0.21
DDX55-212ENST00000544738 HCAR2Q8TDS4 363 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 KLF6Q99612 283 aaPredicted RBP16.38■□□□□ 0.21
DDX55-212ENST00000544738 C1QTNF7Q9BXJ2 289 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 KLC2Q9H0B6 622 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 DHX35Q9H5Z1 703 aaKnown RBP16.38■□□□□ 0.21
DDX55-212ENST00000544738 LRRC19Q9H756 370 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 MRPL47Q9HD33 250 aaKnown RBP16.38■□□□□ 0.21
DDX55-212ENST00000544738 GPR27Q9NS67 375 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 DNAJC28Q9NX36 388 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 NLGN3Q9NZ94 848 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 UBA2Q9UBT2 640 aaPredicted RBP16.38■□□□□ 0.21
DDX55-212ENST00000544738 IPO11Q9UI26 975 aaKnown RBP16.38■□□□□ 0.21
DDX55-212ENST00000544738 PCDHGA8Q9Y5G5 932 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 ENTPD2Q9Y5L3 495 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 U3KQA8 63 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 BSNQ9UPA5 3926 aa16.38■□□□□ 0.21
DDX55-212ENST00000544738 ARHGAP42A6NI28 874 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 K7ESM1 405 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 RAD51BO15315 384 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 DAPK3O43293 454 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 ATMINO43313 823 aaPredicted RBP16.37■□□□□ 0.21
DDX55-212ENST00000544738 PRPSAP2O60256 369 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 XPAP23025 273 aaPredicted RBP16.37■□□□□ 0.21
DDX55-212ENST00000544738 CDKN3Q16667 212 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 CRTC1Q6UUV9 634 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 PARGQ86W56 976 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 DNAAF5Q86Y56 855 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 SLC22A18ASQ8N1D0 253 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 VOPP1Q96AW1 172 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 GRAMD1AQ96CP6 724 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 SGF29Q96ES7 293 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 FUCA2Q9BTY2 467 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 CNOT8Q9UFF9 292 aaKnown RBP16.37■□□□□ 0.21
DDX55-212ENST00000544738 PCSK1NQ9UHG2 260 aa16.37■□□□□ 0.21
DDX55-212ENST00000544738 NBASA2RRP1 2371 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 UTP20O75691 2785 aaKnown RBP16.36■□□□□ 0.21
DDX55-212ENST00000544738 RELNP78509 3460 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 H3BM21 787 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 DDX3XO00571 662 aaKnown RBP eCLIP16.36■□□□□ 0.214e-17■■■□□ 15.8
DDX55-212ENST00000544738 TOR1BO14657 336 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 SCAMP1O15126 338 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 PRAMEF11O60813 436 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 CSF2P04141 144 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 HCAR3P49019 387 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 INHBCP55103 352 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 TLE1Q04724 770 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 ELP6Q0PNE2 266 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 FZD2Q14332 565 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 CYTH1Q15438 398 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 C4orf17Q53FE4 359 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 RBM44Q6ZP01 1051 aaKnown RBP16.36■□□□□ 0.21
DDX55-212ENST00000544738 RFX8Q6ZV50 586 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 EFL1Q7Z2Z2 1120 aaKnown RBP16.36■□□□□ 0.21
DDX55-212ENST00000544738 ARFGAP1Q8N6T3 406 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 WDR36Q8NI36 951 aaKnown RBP16.36■□□□□ 0.21
DDX55-212ENST00000544738 CXorf40AQ8TE69 158 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 ZNF653Q96CK0 615 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 SNRNP25Q9BV90 132 aaKnown RBP16.36■□□□□ 0.21
DDX55-212ENST00000544738 DUSP23Q9BVJ7 150 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 USP29Q9HBJ7 922 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 GPATCH2LQ9NWQ4 482 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 LHX3Q9UBR4 397 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 GGT7Q9UJ14 662 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 ATXN7L1Q9ULK2 861 aaPredicted RBP16.36■□□□□ 0.21
DDX55-212ENST00000544738 ITM2BQ9Y287 266 aa16.36■□□□□ 0.21
DDX55-212ENST00000544738 BZW2Q9Y6E2 419 aaKnown RBP16.36■□□□□ 0.21
DDX55-212ENST00000544738 RIOK3O14730 519 aaKnown RBP16.35■□□□□ 0.21
DDX55-212ENST00000544738 SPINT1O43278 529 aa16.35■□□□□ 0.21
DDX55-212ENST00000544738 TM7SF2O76062 418 aa16.35■□□□□ 0.21
DDX55-212ENST00000544738 SFTPCP11686 197 aa16.35■□□□□ 0.21
DDX55-212ENST00000544738 NME1P15531 152 aaKnown RBP16.35■□□□□ 0.21
DDX55-212ENST00000544738 TIMP2P16035 220 aa16.35■□□□□ 0.21
DDX55-212ENST00000544738 MIPP30301 263 aa16.35■□□□□ 0.21
DDX55-212ENST00000544738 CSNK1DP48730 415 aa16.35■□□□□ 0.21
DDX55-212ENST00000544738 THOP1P52888 689 aa16.35■□□□□ 0.21
DDX55-212ENST00000544738 PDE1CQ14123 709 aaPredicted RBP16.35■□□□□ 0.21
DDX55-212ENST00000544738 PTK2BQ14289 1009 aa16.35■□□□□ 0.21
DDX55-212ENST00000544738 CA9Q16790 459 aa16.35■□□□□ 0.21
DDX55-212ENST00000544738 KLHL40Q2TBA0 621 aa16.35■□□□□ 0.21
DDX55-212ENST00000544738 PPP6R3Q5H9R7 873 aaPredicted RBP16.35■□□□□ 0.21
DDX55-212ENST00000544738 E4F1Q66K89 784 aaPredicted RBP16.35■□□□□ 0.21
DDX55-212ENST00000544738 GUSBP11Q6P575 273 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms