RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 IGSF5Q9NSI5 407 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 INTS10Q9NVR2 710 aaKnown RBP9.93□□□□□ -0.82
SS18-205ENST00000542420 XPR1Q9UBH6 696 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 SEPT3Q9UH03 358 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 TMCO1Q9UM00 188 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 CDYLQ9Y232 598 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 VPS9D1Q9Y2B5 631 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 OBSL1O75147 1896 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 ZNF106Q9H2Y7 1883 aaKnown RBP9.93□□□□□ -0.82
SS18-205ENST00000542420 A0A088AWK7 358 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 RGSL1A5PLK6 1076 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 DLX3O60479 287 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 CLDN11O75508 207 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 PIGNO95427 931 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 GALTP07902 379 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 COX4I1P13073 169 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 ATP5C1P36542 298 aaKnown RBP9.93□□□□□ -0.82
SS18-205ENST00000542420 PPARGP37231 505 aaPredicted RBP9.93□□□□□ -0.82
SS18-205ENST00000542420 CD86P42081 329 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 MAGEA8P43361 318 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 GPR15P49685 360 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 INHBCP55103 352 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 MXRA7P84157 204 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 MPP1Q00013 466 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 KDSRQ06136 332 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 SLC10A7Q0GE19 358 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 RCN1Q15293 331 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 TAF11Q15544 211 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 ALFQ53S48 1182 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 TPGS2Q68CL5 300 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 MRNIPQ6NTE8 343 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 ATG14Q6ZNE5 492 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 DENND6AQ8IWF6 608 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 TNS4Q8IZW8 715 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 OR13J1Q8NGT2 312 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 BRSK1Q8TDC3 778 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 IGSF8Q969P0 613 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 L3HYPDHQ96EM0 354 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 TRMT2BQ96GJ1 504 aaKnown RBP9.93□□□□□ -0.82
SS18-205ENST00000542420 MYRFLQ96LU7 910 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 RPRD1AQ96P16 312 aaPredicted RBP9.93□□□□□ -0.82
SS18-205ENST00000542420 SERPINI1Q99574 410 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 GPR62Q9BZJ7 368 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 VCX3BQ9H321 246 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 PAPOLBQ9NRJ5 636 aaKnown RBP9.93□□□□□ -0.82
SS18-205ENST00000542420 SLC7A8Q9UHI5 535 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 PCDHGA4Q9Y5G9 962 aa9.93□□□□□ -0.82
SS18-205ENST00000542420 ILVBLA1L0T0 632 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 J3KR12 359 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 TK2O00142 265 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 NVLO15381 856 aaKnown RBP9.92□□□□□ -0.82
SS18-205ENST00000542420 GRID2O43424 1007 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 TLR5O60602 858 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 NBNO60934 754 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 RPP40O75818 363 aaKnown RBP9.92□□□□□ -0.82
SS18-205ENST00000542420 VNN2O95498 520 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 NDST3O95803 873 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 INHAP05111 366 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 SERPINF2P08697 491 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 HSPA1AP0DMV8 641 aaKnown RBP9.92□□□□□ -0.82
SS18-205ENST00000542420 HSPA1BP0DMV9 641 aaKnown RBP9.92□□□□□ -0.82
SS18-205ENST00000542420 TFEBP19484 476 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 ATP4BP51164 291 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 SEPT6Q14141 434 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 ZNF235Q14590 738 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 MAPRE2Q15555 327 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 TYSND1Q2T9J0 566 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 ARL13AQ5H913 290 aaPredicted RBP9.92□□□□□ -0.82
SS18-205ENST00000542420 SIRPB2Q5JXA9 342 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 RASIP1Q5U651 963 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 RAP1GAP2Q684P5 730 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 LRRC74BQ6ZQY2 392 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 TMEM126BQ8IUX1 230 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 CEP97Q8IW35 865 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 GALNT15Q8N3T1 639 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 ATAD1Q8NBU5 361 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 B4GALNT2Q8NHY0 566 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 RHEBL1Q8TAI7 183 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 DNAJC9Q8WXX5 260 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 PSMG2Q969U7 264 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 ATXN7L3BQ96GX2 97 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 ZNF333Q96JL9 665 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 PSKH2Q96QS6 385 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 MRPL40Q9NQ50 206 aaKnown RBP9.92□□□□□ -0.82
SS18-205ENST00000542420 CHCHD3Q9NX63 227 aaKnown RBP9.92□□□□□ -0.82
SS18-205ENST00000542420 AFF4Q9UHB7 1163 aaKnown RBP9.92□□□□□ -0.82
SS18-205ENST00000542420 SSX2IPQ9Y2D8 614 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 VWA7Q9Y334 891 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 DENND4CQ5VZ89 1909 aa9.92□□□□□ -0.82
SS18-205ENST00000542420 CXorf51AA0A1B0GTR3 108 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 ZSCAN9O15535 394 aaPredicted RBP9.91□□□□□ -0.82
SS18-205ENST00000542420 PHGDHO43175 533 aaKnown RBP9.91□□□□□ -0.82
SS18-205ENST00000542420 LDB2O43679 373 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 KDELR3O43731 214 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 CNTN5O94779 1100 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 CRTAMO95727 393 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 S1PR4O95977 384 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 IMPDH2P12268 514 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 FDXRP22570 491 aa9.91□□□□□ -0.82
SS18-205ENST00000542420 OR1E1P30953 314 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms