RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PHLDB2Q86SQ0 1253 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 ZNF354CQ86Y25 554 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 DNAAF5Q86Y56 855 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 PHF13Q86YI8 300 aaPredicted RBP13.69□□□□□ -0.22
SS18-204ENST00000539244 UMODL1-AS1Q8N2C9 162 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 PYROXD2Q8N2H3 581 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 C3orf20Q8ND61 904 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 GPR156Q8NFN8 814 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 TSACCQ96A04 125 aaPredicted RBP13.69□□□□□ -0.22
SS18-204ENST00000539244 TMEM74Q96NL1 305 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 RBM15Q96T37 977 aaKnown RBP eCLIP13.69□□□□□ -0.22
SS18-204ENST00000539244 CLSTN2Q9H4D0 955 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 SUV39H2Q9H5I1 410 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 SYNDIG1Q9H7V2 258 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 SIRPGQ9P1W8 387 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 GULP1Q9UBP9 304 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 APPL1Q9UKG1 709 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 GPR34Q9UPC5 381 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 COQ6Q9Y2Z9 468 aa13.69□□□□□ -0.22
SS18-204ENST00000539244 TCRBV5S1A1TA0A578 114 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 CFAP69A5D8W1 941 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 SIGLEC16A6NMB1 481 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 NVLO15381 856 aaKnown RBP13.68□□□□□ -0.22
SS18-204ENST00000539244 NOBOXO60393 691 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 PIGNO95427 931 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 RPLP0P05388 317 aaKnown RBP13.68□□□□□ -0.22
SS18-204ENST00000539244 PNLIPP16233 465 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 GPD1P21695 349 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 XPAP23025 273 aaPredicted RBP13.68□□□□□ -0.22
SS18-204ENST00000539244 MMP12P39900 470 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 AIF1P55008 147 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 INHBCP55103 352 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 INPP5AQ14642 412 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 EFHC2Q5JST6 749 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 BRAT1Q6PJG6 821 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 WDR59Q6PJI9 974 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 OGFOD3Q6PK18 319 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 ENPP7Q6UWV6 458 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 NETO2Q8NC67 525 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 WDR92Q96MX6 357 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 ZNF641Q96N77 438 aaPredicted RBP13.68□□□□□ -0.22
SS18-204ENST00000539244 TUBGCP5Q96RT8 1024 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 PCDHB18PQ96TA0 734 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 SELENOOQ9BVL4 669 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 LRRN3Q9H3W5 708 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 CLMPQ9H6B4 373 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 CATSPERBQ9H7T0 1116 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 PDFQ9HBH1 243 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 EPB41L5Q9HCM4 733 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 PCDH12Q9NPG4 1184 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 ADAM22Q9P0K1 906 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 KLQ9UEF7 1012 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 FZD10Q9ULW2 581 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 ANKRD36A6QL64 1941 aa13.68□□□□□ -0.22
SS18-204ENST00000539244 FGF10O15520 208 aaPredicted RBP13.67□□□□□ -0.22
SS18-204ENST00000539244 CALB1P05937 261 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 GLB1P16278 677 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 HTR7P34969 479 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 NSFP46459 744 aaKnown RBP13.67□□□□□ -0.22
SS18-204ENST00000539244 LIG3P49916 1009 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 KIAA1024LP59773 190 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 POLR2FP61218 127 aaKnown RBP13.67□□□□□ -0.22
SS18-204ENST00000539244 ZFP36L1Q07352 338 aaKnown RBP13.67□□□□□ -0.22
SS18-204ENST00000539244 CERCAMQ5T4B2 595 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 KCTD16Q68DU8 428 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 ERAP2Q6P179 960 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 CCNJLQ8IV13 435 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 TMEM159Q96B96 161 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 SGF29Q96ES7 293 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 PDXPQ96GD0 296 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 EXOC2Q96KP1 924 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 NCAPGQ9BPX3 1015 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 FOXP3Q9BZS1 431 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 LRRC19Q9H756 370 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 UBA2Q9UBT2 640 aaPredicted RBP13.67□□□□□ -0.22
SS18-204ENST00000539244 ATP8A1Q9Y2Q0 1164 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 OR1A2Q9Y585 309 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 BOD1L1Q8NFC6 3051 aa13.67□□□□□ -0.22
SS18-204ENST00000539244 ARHGEF17Q96PE2 2063 aaPredicted RBP13.67□□□□□ -0.22
SS18-204ENST00000539244 TNFRSF10CO14798 259 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 EPHB6O15197 1021 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 CCP110O43303 1012 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 SLC28A2O43868 658 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 CREB3O43889 395 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 BUB1BO60566 1050 aaPredicted RBP13.66□□□□□ -0.22
SS18-204ENST00000539244 TNFP01375 233 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 ITGB2P05107 769 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 HOXC4P09017 264 aaPredicted RBP13.66□□□□□ -0.22
SS18-204ENST00000539244 LIPCP11150 499 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 CSNK1DP48730 415 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 KLK7P49862 253 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 ZNF143P52747 638 aaPredicted RBP13.66□□□□□ -0.22
SS18-204ENST00000539244 KCNC4Q03721 635 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 CLEC16AQ2KHT3 1053 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 LINC00303Q3SY05 128 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 NYAP1Q6ZVC0 841 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 MON1BQ7L1V2 547 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 RD3Q7Z3Z2 195 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 ZSWIM9Q86XI8 627 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 EXD3Q8N9H8 876 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms