RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 CITO14578 2027 aa6.76□□□□□ -1.33
USP28-207ENST00000538475 LRRC37AA6NMS7 1700 aa6.76□□□□□ -1.33
USP28-207ENST00000538475 CCDC195A0A1B0GUA6 201 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 TCRBV7S3A2A0A539 114 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 TAF4O00268 1085 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 EIF3FO00303 357 aaPredicted RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 CLOCKO15516 846 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 PHGDHO43175 533 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 MED7O43513 233 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 EXTL3O43909 919 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 PLA2G6O60733 806 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 KATNA1O75449 491 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 BANF1O75531 89 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 STAM2O75886 525 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 SUPT7LO94864 414 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 VAPBO95292 243 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 RASAL1O95294 804 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 TIAF1O95411 115 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 CHEK2O96017 543 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 C4BPAP04003 597 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 GSNP06396 782 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 AKR1B1P15121 316 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 IMPDH1P20839 514 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 FASP25445 335 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 EEF1DP29692 281 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 SERPINB1P30740 379 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 SPRP35270 261 aaPredicted RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 GP5P40197 560 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 CRKLP46109 303 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 QARSP47897 775 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 PRIM2P49643 509 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 PEX3P56589 373 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 RPL10AP62906 217 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 PHC1P78364 1004 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 PRKCQQ04759 706 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 FOXM1Q08050 763 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 NIPAL4Q0D2K0 466 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 ZNF252P-AS1Q0IIN9 211 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 BST2Q10589 180 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 TRAF2Q12933 501 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 PMS2P3Q13401 168 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 PDE1CQ14123 709 aaPredicted RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 LLGL1Q15334 1064 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 SURF1Q15526 300 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 MAPRE1Q15691 268 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 ATP6AP1Q15904 470 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 PSMD5Q16401 504 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 COQ5Q5HYK3 327 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 FGD3Q5JSP0 725 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 PPM1LQ5SGD2 360 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 GPR107Q5VW38 600 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 BTBD8Q5XKL5 378 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 SLFN13Q68D06 897 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 GTF2IRD2BQ6EKJ0 949 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 SLFN12LQ6IEE8 588 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 TTBK2Q6IQ55 1244 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 ERAP2Q6P179 960 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 GALNT18Q6P9A2 607 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 DPP8Q6V1X1 898 aaPredicted RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 AKAP14Q86UN6 197 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 GTF2IRD2Q86UP8 949 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 CAND1Q86VP6 1230 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 CBWD2Q8IUF1 395 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 ARMC8Q8IUR7 673 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 LRRC47Q8N1G4 583 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 TMCO5AQ8N6Q1 288 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 SPERTQ8NA61 448 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 TDRD5Q8NAT2 981 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 ANKRD52Q8NB46 1076 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 SIMC1Q8NDZ2 872 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 ABHD11Q8NFV4 315 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 OR2T34Q8NGX1 318 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 OR2T3Q8NH03 318 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 GRPEL2Q8TAA5 225 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 SPATA18Q8TC71 538 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 PHF10Q8WUB8 498 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 ZNF606Q8WXB4 792 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 TANKQ92844 425 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.75□□□□□ -1.33
USP28-207ENST00000538475 RCN3Q96D15 328 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 CFAP36Q96G28 342 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 ZNF486Q96H40 463 aaPredicted RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 MAELQ96JY0 434 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 UBXN10Q96LJ8 280 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 KLHL32Q96NJ5 620 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 ASB16Q96NS5 453 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 UIMC1Q96RL1 719 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 TBCBQ99426 244 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 FAM118BQ9BPY3 351 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 HOPXQ9BPY8 73 aaPredicted RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 LXNQ9BS40 222 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 DCUN1D5Q9BTE7 237 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 SLC25A23Q9BV35 468 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 HOXD1Q9GZZ0 328 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 SPAG4Q9NPE6 437 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 TBC1D22BQ9NU19 505 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 ASNSD1Q9NWL6 643 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 NSMCE4AQ9NXX6 385 aa6.75□□□□□ -1.33
USP28-207ENST00000538475 MAP3K20Q9NYL2 800 aaKnown RBP6.75□□□□□ -1.33
USP28-207ENST00000538475 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms