RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 PLEKHA7Q6IQ23 1121 aa17.96■□□□□ 0.47
PCF11-206ENST00000533018 BRAT1Q6PJG6 821 aa17.96■□□□□ 0.47
PCF11-206ENST00000533018 RFX8Q6ZV50 586 aa17.96■□□□□ 0.47
PCF11-206ENST00000533018 SRLQ86TD4 932 aa17.96■□□□□ 0.47
PCF11-206ENST00000533018 TSEN2Q8NCE0 465 aaKnown RBP17.96■□□□□ 0.47
PCF11-206ENST00000533018 ZNF248Q8NDW4 579 aa17.96■□□□□ 0.47
PCF11-206ENST00000533018 TPCN2Q8NHX9 752 aa17.96■□□□□ 0.47
PCF11-206ENST00000533018 TSACCQ96A04 125 aaPredicted RBP17.96■□□□□ 0.47
PCF11-206ENST00000533018 TUBGCP5Q96RT8 1024 aa17.96■□□□□ 0.47
PCF11-206ENST00000533018 UBL7Q96S82 380 aaPredicted RBP17.96■□□□□ 0.47
PCF11-206ENST00000533018 PEBP4Q96S96 227 aa17.96■□□□□ 0.47
PCF11-206ENST00000533018 KCTD15Q96SI1 283 aaPredicted RBP17.96■□□□□ 0.47
PCF11-206ENST00000533018 BOCQ9BWV1 1114 aa17.96■□□□□ 0.47
PCF11-206ENST00000533018 POLR1BQ9H9Y6 1135 aa17.96■□□□□ 0.47
PCF11-206ENST00000533018 CNOT8Q9UFF9 292 aaKnown RBP17.96■□□□□ 0.47
PCF11-206ENST00000533018 OR1A2Q9Y585 309 aa17.96■□□□□ 0.47
PCF11-206ENST00000533018 TMEM191CA6NGB0 347 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 EIF3CLB5ME19 914 aaKnown RBP17.95■□□□□ 0.46
PCF11-206ENST00000533018 MIPP30301 263 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 LSSP48449 732 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 PEX5P50542 639 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 HK3P52790 923 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 BCL2L1Q07817 233 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 KLHL30Q0D2K2 578 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 ELOCQ15369 112 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 PERM1Q5SV97 790 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 FOXR1Q6PIV2 292 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 RBM44Q6ZP01 1051 aaKnown RBP17.95■□□□□ 0.46
PCF11-206ENST00000533018 ZNF571Q7Z3V5 609 aaPredicted RBP17.95■□□□□ 0.46
PCF11-206ENST00000533018 SLC35F3Q8IY50 421 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 ARFGAP1Q8N6T3 406 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 ZNF653Q96CK0 615 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 TBATAQ96M53 351 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 EIF3CQ99613 913 aaKnown RBP17.95■□□□□ 0.46
PCF11-206ENST00000533018 SYT11Q9BT88 431 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 APOOQ9BUR5 198 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 CLPBQ9H078 707 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 PRORYQ9H606 182 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 TMEM63CQ9P1W3 806 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 SIRPGQ9P1W8 387 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 MYO1AQ9UBC5 1043 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 PADI4Q9UM07 663 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 SATB2Q9UPW6 733 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 ATP8A1Q9Y2Q0 1164 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 MGAQ8IWI9 3026 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 KIF26BQ2KJY2 2108 aa17.95■□□□□ 0.46
PCF11-206ENST00000533018 RASGRP1O95267 797 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 CELA2BP08218 269 aaPredicted RBP17.94■□□□□ 0.46
PCF11-206ENST00000533018 ALPIP09923 528 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 RBMS1P29558 406 aaKnown RBP17.94■□□□□ 0.46
PCF11-206ENST00000533018 RGRP47804 291 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 SCNN1BP51168 640 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 CXADRP78310 365 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 NFATC4Q14934 902 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 BROXQ5VW32 411 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 ARHGAP36Q6ZRI8 547 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 SPACA3Q8IXA5 215 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 FSTL5Q8N475 847 aaPredicted RBP17.94■□□□□ 0.46
PCF11-206ENST00000533018 ATL2Q8NHH9 583 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 NAT6Q93015 286 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 ATXN7L3BQ96GX2 97 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 TRIM7Q9C029 511 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 KLQ9UEF7 1012 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 SCINQ9Y6U3 715 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 GCN1Q92616 2671 aaKnown RBP17.94■□□□□ 0.46
PCF11-206ENST00000533018 KALRNO60229 2985 aa17.94■□□□□ 0.46
PCF11-206ENST00000533018 TSPAN11A1L157 253 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 A8MX80 341 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 SERPINC1P01008 464 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 GZMAP12544 262 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 SKILP12757 684 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 MMP12P39900 470 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 CSNK1DP48730 415 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 SRP54P61011 504 aaKnown RBP17.93■□□□□ 0.46
PCF11-206ENST00000533018 POLR2LP62875 67 aaKnown RBP17.93■□□□□ 0.46
PCF11-206ENST00000533018 TLE3Q04726 772 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 ALG11Q2TAA5 492 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 GPR155Q7Z3F1 870 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 ZSWIM9Q86XI8 627 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 GKN2Q86XP6 184 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 PCDH19Q8TAB3 1148 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 CCDC3Q9BQI4 270 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 BPIFA3Q9BQP9 254 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 EDEM3Q9BZQ6 932 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 ZWILCHQ9H900 591 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 MRPL47Q9HD33 250 aaKnown RBP17.93■□□□□ 0.46
PCF11-206ENST00000533018 THSD1Q9NS62 852 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 AIPL1Q9NZN9 384 aa17.93■□□□□ 0.46
PCF11-206ENST00000533018 DDX3XO00571 662 aaKnown RBP eCLIP17.92■□□□□ 0.46
PCF11-206ENST00000533018 TCEA3O75764 348 aa17.92■□□□□ 0.46
PCF11-206ENST00000533018 TNFP01375 233 aa17.92■□□□□ 0.46
PCF11-206ENST00000533018 ELFN1P0C7U0 828 aa17.92■□□□□ 0.46
PCF11-206ENST00000533018 ZNF165P49910 485 aa17.92■□□□□ 0.46
PCF11-206ENST00000533018 ERVPABLB-1P60509 514 aa17.92■□□□□ 0.46
PCF11-206ENST00000533018 IL10RBQ08334 325 aa17.92■□□□□ 0.46
PCF11-206ENST00000533018 SPIDRQ14159 915 aa17.92■□□□□ 0.46
PCF11-206ENST00000533018 RFTN1Q14699 578 aaPredicted RBP17.92■□□□□ 0.46
PCF11-206ENST00000533018 PSTKQ8IV42 348 aaKnown RBP17.92■□□□□ 0.46
PCF11-206ENST00000533018 ARHGAP12Q8IWW6 846 aa17.92■□□□□ 0.46
PCF11-206ENST00000533018 NPWQ8N729 165 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms