RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 LYPLAL1Q5VWZ2 237 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 NEPROQ6NW34 567 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 UBA3Q8TBC4 463 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ROPN1LQ96C74 230 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 IL1RAPQ9NPH3 570 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF446Q9NWS9 450 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 RABL2AQ9UBK7 228 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 RABL2BQ9UNT1 228 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 PCDHA11Q9Y5I1 949 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 MAU2Q9Y6X3 613 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 PZPP20742 1482 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 CAPN8A6NHC0 703 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ADAMDEC1O15204 470 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 DNAJB5O75953 348 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ERBB2P04626 1255 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 CYP1A2P05177 515 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 GNAO1P09471 354 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 CLK3P49761 638 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 GSCP56915 257 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ADAM8P78325 824 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 MTM1Q13496 603 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 HYIQ5T013 277 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 VWA5B1Q5TIE3 1220 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 DNAJC14Q6Y2X3 702 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 RAB11FIP2Q7L804 512 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ADAMTSL2Q86TH1 951 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 MARCH10Q8NA82 808 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 SMG8Q8ND04 991 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 LSM14AQ8ND56 463 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ZSWIM2Q8NEG5 633 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 SMARCD1Q96GM5 515 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 PCDHGA4Q9Y5G9 962 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 OAS3Q9Y6K5 1087 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 LRRC10BA6NIK2 292 aa11.27□□□□□ -0.6
LIMCH1-217ENST00000512946 H7C4K7 107 aa11.27□□□□□ -0.6
LIMCH1-217ENST00000512946 GPSM2P81274 684 aa11.27□□□□□ -0.6
LIMCH1-217ENST00000512946 C4orf46Q504U0 113 aa11.27□□□□□ -0.6
LIMCH1-217ENST00000512946 KLHL22Q53GT1 634 aa11.27□□□□□ -0.6
LIMCH1-217ENST00000512946 PPP1R15BQ5SWA1 713 aa11.27□□□□□ -0.6
LIMCH1-217ENST00000512946 GLB1LQ6UWU2 654 aa11.27□□□□□ -0.6
LIMCH1-217ENST00000512946 RXFP2Q8WXD0 754 aa11.27□□□□□ -0.6
LIMCH1-217ENST00000512946 TOP1MTQ969P6 601 aa11.27□□□□□ -0.6
LIMCH1-217ENST00000512946 CCDC3Q9BQI4 270 aa11.27□□□□□ -0.6
LIMCH1-217ENST00000512946 MXRA8Q9BRK3 442 aa11.27□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF335Q9H4Z2 1342 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 WDR27A2RRH5 827 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 CYP7B1O75881 506 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 ARCN1P48444 511 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 CCSAPQ6IQ19 270 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 TRABD2AQ86V40 505 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 ATCAYQ86WG3 371 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 GALNT12Q8IXK2 581 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 LMAN2LQ9H0V9 348 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 UNC93B1Q9H1C4 597 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 DNAJC18Q9H819 358 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 TMEM5Q9Y2B1 443 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 TAF6LQ9Y6J9 622 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 BTN3A1O00481 513 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 FADS2O95864 444 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 MT-CO1P00395 513 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 HMGCRP04035 888 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 PAEPP09466 180 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 EPCAMP16422 314 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 MGAT1P26572 445 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 SSTR3P32745 418 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 ACSL1P33121 698 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 TCF7P36402 384 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 CRKLP46109 303 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 SLC7A2P52569 658 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 CTBP2P56545 445 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 CACNB2Q08289 660 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 USP4Q13107 963 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 PROSER3Q2NL68 480 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 SLC25A25Q6KCM7 469 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 PTAR1Q7Z6K3 402 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 IQCKQ8N0W5 287 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 TBL1YQ9BQ87 522 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 CBWD1Q9BRT8 395 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 OR2B2Q9GZK3 357 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 OSGEPQ9NPF4 335 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 WDR62O43379 1518 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 FADS2P1A8MWK0 482 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 FDPSP14324 419 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 SLC6A2P23975 617 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 ECHS1P30084 290 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 LHX1P48742 406 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 TUFMP49411 452 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 AFF1P51825 1210 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 RHOAP61586 193 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 IRF8Q02556 426 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 GCNT7Q6ZNI0 430 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 ASCC1Q8N9N2 400 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 ACE2Q9BYF1 805 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 RNF38Q9H0F5 515 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 NXF3Q9H4D5 531 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 CDHR5Q9HBB8 845 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 TMEM184CQ9NVA4 438 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 NDUFAF4Q9P032 175 aa11.27□□□□□ -0.61
LIMCH1-217ENST00000512946 MAGED1Q9Y5V3 778 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms