RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 LPCAT2Q7L5N7 544 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 IFNEQ86WN2 208 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 OR52K2Q8NGK3 314 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 ZNF597Q96LX8 424 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 FCRL5Q96RD9 977 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 ZNF408Q9H9D4 720 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 MIOSQ9NXC5 875 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 SUCOQ9UBS9 1254 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 UBFD1O14562 309 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 CLIC3O95833 236 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 PGFP49763 221 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 NDST2P52849 883 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 AIF1P55008 147 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 TECRLQ5HYJ1 363 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 GPR158Q5T848 1215 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 AGAP9Q5VTM2 703 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 BHLHA9Q7RTU4 235 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 LCA5Q86VQ0 697 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 DHFR2Q86XF0 187 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 EMID1Q96A84 441 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 OLAHQ9NV23 265 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 PLK2Q9NYY3 685 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 LRRC14BA6NHZ5 514 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 PSMD3O43242 534 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 FOXD2O60548 495 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 MAFKO60675 156 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 CHRM3P20309 590 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 SCNN1BP51168 640 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 YBX1P67809 324 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 CAPRIN1Q14444 709 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 PM20D1Q6GTS8 502 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 POTEHQ6S545 545 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 PIM3Q86V86 326 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 RETREG3Q86VR2 466 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 ZNF354CQ86Y25 554 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 C2CD4AQ8NCU7 369 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 KLHL5Q96PQ7 755 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 ADARB2Q9NS39 739 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 CNOT6Q9ULM6 557 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 MYRFQ9Y2G1 1151 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 ANKRD12Q6UB98 2062 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 SMIM35A0A1B0GVV1 85 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 RBM47A0AV96 593 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 NR5A2O00482 541 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 HTRA2O43464 458 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 PAGE1O75459 146 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 SRP72O76094 671 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 SIX3O95343 332 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 GNAO1P09471 354 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 PAMP19021 973 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 SLC7A1P30825 629 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 BEX3Q00994 111 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 CACNB2Q08289 660 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 SQLEQ14534 574 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 MAPRE2Q15555 327 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 SHCBP1Q8NEM2 672 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 SNRNP27Q8WVK2 155 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 RMND5BQ96G75 393 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 FCRL2Q96LA5 508 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 MRGPRX2Q96LB1 330 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 AP3B1O00203 1094 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 SOCS2O14508 198 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 TRIM24O15164 1050 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 STAMBPO95630 424 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 PENKP01210 267 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 LTA4HP09960 611 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 ATP6V1B2P21281 511 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 CCNCP24863 283 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 GEMP55040 296 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 POU4F1Q01851 419 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 VPS26BQ4G0F5 336 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 XKR4Q5GH76 650 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 KLC3Q6P597 504 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 SPPL2CQ8IUH8 684 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 FUNDC1Q8IVP5 155 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 CNTN4Q8IWV2 1026 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 ZNF786Q8N393 782 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 AFAP1L2Q8N4X5 818 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 GAB3Q8WWW8 586 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 MYLPFQ96A32 169 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 TINF2Q9BSI4 451 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 DCUN1D5Q9BTE7 237 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 EFHD1Q9BUP0 239 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 OSBPL11Q9BXB4 747 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 RSL24D1Q9UHA3 163 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 KCTD3Q9Y597 815 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 A0A087X1B8 175 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 HHLA1C9JL84 531 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 MAGEB3O15480 346 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 C8BP07358 591 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 KPNA2P52292 529 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 PRKCQQ04759 706 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 PTPRCAPQ14761 206 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 SAMD4BQ5PRF9 694 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 RANBP10Q6VN20 620 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 CYHR1Q6ZMK1 362 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 TFAP2DQ7Z6R9 452 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 CBR4Q8N4T8 237 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 PBXIP1Q96AQ6 731 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 MAML3Q96JK9 1138 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms