RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 GRIK3Q13003 919 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 DMC1Q14565 340 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 DUOXA1Q1HG43 343 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 USP41Q3LFD5 358 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 LRCH2Q5VUJ6 765 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 LYSMD4Q5XG99 296 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 KAZNQ674X7 775 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 TWF2Q6IBS0 349 aaKnown RBP4.22□□□□□ -1.73
USP54-217ENST00000498213 ANO7Q6IWH7 933 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 NOTUMQ6P988 496 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 LPCAT2Q7L5N7 544 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 GLRX5Q86SX6 157 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 RALGPS2Q86X27 583 aaPredicted RBP4.22□□□□□ -1.73
USP54-217ENST00000498213 MICU3Q86XE3 530 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 CFAP52Q8N1V2 620 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 C3orf20Q8ND61 904 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 NSUN7Q8NE18 718 aaKnown RBP4.22□□□□□ -1.73
USP54-217ENST00000498213 TMIEQ8NEW7 156 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 CCDC26Q8TAB7 109 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 WASF1Q92558 559 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 EXOC4Q96A65 974 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 RSPRY1Q96DX4 576 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 UROC1Q96N76 676 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 TRIB1Q96RU8 372 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 GAD1Q99259 594 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 SIK2Q9H0K1 926 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 DHX33Q9H6R0 707 aaKnown RBP4.22□□□□□ -1.73
USP54-217ENST00000498213 PCDH12Q9NPG4 1184 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 MARCH5Q9NX47 278 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 GABBR1Q9UBS5 961 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 FEZ2Q9UHY8 353 aaPredicted RBP4.22□□□□□ -1.73
USP54-217ENST00000498213 FBXW11Q9UKB1 542 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 PILRBQ9UKJ0 227 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 SLC45A2Q9UMX9 530 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 COX11Q9Y6N1 276 aa4.22□□□□□ -1.73
USP54-217ENST00000498213 A0A1B0GUA9 196 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 ANO9A1A5B4 782 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 WDR27A2RRH5 827 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 HEPACAM2A8MVW5 462 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 ZNF197O14709 1029 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 ADAM12O43184 909 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 GJB3O75712 270 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 ERLIN2O94905 339 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 REC8O95072 547 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 DEXIO95424 95 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 FGF19O95750 216 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 IL33O95760 270 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 EGFP01133 1207 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 SERPINF2P08697 491 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 GJA1P17302 382 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 U2AF2P26368 475 aaKnown RBP eCLIP4.21□□□□□ -1.74
USP54-217ENST00000498213 ABCD1P33897 745 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 RARRES1P49788 294 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 CACNA2D1P54289 1103 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 SLC14A1Q13336 389 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 DYRK1AQ13627 763 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 SMAD1Q15797 465 aaKnown RBP4.21□□□□□ -1.74
USP54-217ENST00000498213 UBE2SQ16763 222 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 FAM187BQ17R55 369 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 FLYWCH1Q4VC44 716 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 VWA1Q6PCB0 445 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 MICALCLQ6ZW33 695 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 CATSPER4Q7RTX7 472 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 MIER3Q7Z3K6 550 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 ZBTB46Q86UZ6 589 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 MFSD6LQ8IWD5 586 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 ADGRG5Q8IZF4 528 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 MMP21Q8N119 569 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 MCPH1Q8NEM0 835 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 TSTD1Q8NFU3 115 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 RPLP0P6Q8NHW5 317 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 SLC30A5Q8TAD4 765 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 DEPDC1BQ8WUY9 529 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 TFAP2BQ92481 460 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 SMARCD2Q92925 531 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 PGBD1Q96JS3 809 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 FNBP1Q96RU3 617 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 LSG1Q9H089 658 aaKnown RBP4.21□□□□□ -1.74
USP54-217ENST00000498213 C2orf40Q9H1Z8 148 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 FBRSL1Q9HCM7 1045 aaKnown RBP4.21□□□□□ -1.74
USP54-217ENST00000498213 ANKEF1Q9NU02 776 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 SIDT1Q9NXL6 827 aaKnown RBP4.21□□□□□ -1.74
USP54-217ENST00000498213 SUCLA2Q9P2R7 463 aaPredicted RBP4.21□□□□□ -1.74
USP54-217ENST00000498213 PIN4Q9Y237 131 aaKnown RBP4.21□□□□□ -1.74
USP54-217ENST00000498213 PCDHB2Q9Y5E7 798 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 HIVEP1P15822 2718 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 KNTC1P50748 2209 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 TSC2P49815 1807 aa4.21□□□□□ -1.74
USP54-217ENST00000498213 PTPRBP23467 1997 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 SPENQ96T58 3664 aaKnown RBP4.2□□□□□ -1.74
USP54-217ENST00000498213 ARHGEF37A1IGU5 675 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 E9PAM4 449 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 F5H697 171 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 F2RL2O00254 374 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 MPPED1O15442 326 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 MSH4O15457 936 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 KLK10O43240 276 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 SUN1O94901 812 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 LUC7L3O95232 432 aaKnown RBP4.2□□□□□ -1.74
USP54-217ENST00000498213 BAG4O95429 457 aaKnown RBP4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms