RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 JCHAINP01591 159 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 PRKCGP05129 697 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 PTMAP06454 111 aaKnown RBP16.05■□□□□ 0.16
LIME1-209ENST00000494776 THEGLP0DJG4 465 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 CTNNA2P26232 953 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 CCT8P50990 548 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 CLDN2P57739 230 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 NXPH1P58417 271 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 COPS2P61201 443 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 SEMG2Q02383 582 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 DSC2Q02487 901 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 FGL2Q14314 439 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 TAZQ16635 292 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 TMEM52BQ4KMG9 183 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 PPM1JQ5JR12 505 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 ZSWIM9Q86XI8 627 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 UBL4BQ8N7F7 174 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 LRRC57Q8N9N7 239 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 TMEM145Q8NBT3 493 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 FAM174AQ8TBP5 190 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 ECHDC3Q96DC8 303 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 C1QTNF2Q9BXJ5 285 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 SAE1Q9UBE0 346 aaPredicted RBP16.05■□□□□ 0.16
LIME1-209ENST00000494776 GUCA1BQ9UMX6 200 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 FNDC3AQ9Y2H6 1198 aaKnown RBP16.05■□□□□ 0.16
LIME1-209ENST00000494776 PCDHB9Q9Y5E1 797 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 HS3ST3A1Q9Y663 406 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 SHROOM3Q8TF72 1996 aa16.05■□□□□ 0.16
LIME1-209ENST00000494776 DCHS1Q96JQ0 3298 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 LAMA1P25391 3075 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 A8MX80 341 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 H0Y8X5 98 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 HTRA2O43464 458 aaPredicted RBP16.04■□□□□ 0.16
LIME1-209ENST00000494776 LZTS3O60299 673 aaPredicted RBP16.04■□□□□ 0.16
LIME1-209ENST00000494776 HLA-DQB2P05538 268 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 ZNF883P0CG24 379 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 CA4P22748 312 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 ARRB1P49407 418 aaPredicted RBP16.04■□□□□ 0.16
LIME1-209ENST00000494776 NOVA1P51513 510 aaKnown RBP16.04■□□□□ 0.16
LIME1-209ENST00000494776 IL9RQ01113 521 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 PPP2R5EQ16537 467 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 ZNF423Q2M1K9 1284 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 PRAMEF14Q5SWL7 426 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 ARMC12Q5T9G4 340 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 B4GALNT4Q76KP1 1039 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 PTAR1Q7Z6K3 402 aaPredicted RBP16.04■□□□□ 0.16
LIME1-209ENST00000494776 NT5DC3Q86UY8 548 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 NDUFAF2Q8N183 169 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 RNF10Q8N5U6 811 aaKnown RBP16.04■□□□□ 0.16
LIME1-209ENST00000494776 DEFB124Q8NES8 71 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 SETD7Q8WTS6 366 aaKnown RBP16.04■□□□□ 0.16
LIME1-209ENST00000494776 TFB1MQ8WVM0 346 aaKnown RBP16.04■□□□□ 0.16
LIME1-209ENST00000494776 ASB12Q8WXK4 309 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 ANP32BQ92688 251 aaKnown RBP16.04■□□□□ 0.16
LIME1-209ENST00000494776 HAUS1Q96CS2 278 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 NSMCE3Q96MG7 304 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 OLFM3Q96PB7 478 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 LENG8Q96PV6 779 aaPredicted RBP16.04■□□□□ 0.16
LIME1-209ENST00000494776 ELF4Q99607 663 aaPredicted RBP16.04■□□□□ 0.16
LIME1-209ENST00000494776 PHTF1Q9UMS5 762 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 COQ6Q9Y2Z9 468 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 RAI2Q9Y5P3 530 aa16.04■□□□□ 0.16
LIME1-209ENST00000494776 RAD51BO15315 384 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 KCNK5O95279 499 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 FTCDO95954 541 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 CCDC175P0C221 793 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 ELFN1P0C7U0 828 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 C6P13671 934 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 CD59P13987 128 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 PECAM1P16284 738 aaPredicted RBP16.03■□□□□ 0.16
LIME1-209ENST00000494776 CSRP1P21291 193 aaKnown RBP16.03■□□□□ 0.16
LIME1-209ENST00000494776 MMP12P39900 470 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 LIG3P49916 1009 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 EPHB1P54762 984 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 IFI35P80217 286 aaPredicted RBP16.03■□□□□ 0.16
LIME1-209ENST00000494776 TRAF2Q12933 501 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 PSAPL1Q6NUJ1 521 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 GCNT7Q6ZNI0 430 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 Q6ZSR6 202 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 ZC3H18Q86VM9 953 aaKnown RBP16.03■□□□□ 0.16
LIME1-209ENST00000494776 OXR1Q8N573 874 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 DENND6BQ8NEG7 585 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 OR13H1Q8NG92 308 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 IL12RB2Q99665 862 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 CEP41Q9BYV8 373 aa16.03■□□□□ 0.16
LIME1-209ENST00000494776 A0A1B0GTQ1 180 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 MED19A0JLT2 244 aaPredicted RBP16.02■□□□□ 0.16
LIME1-209ENST00000494776 POM121BA6NF01 834 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 MIF4GDA9UHW6 222 aaKnown RBP16.02■□□□□ 0.16
LIME1-209ENST00000494776 YKT6O15498 198 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 SH3BP5O60239 455 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 PGLSO95336 258 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 CYP2A6P11509 494 aaPredicted RBP16.02■□□□□ 0.16
LIME1-209ENST00000494776 CEACAM1P13688 526 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 RABIFP47224 123 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 ADCY2Q08462 1091 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 ZBTB17Q13105 803 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 LRRC14Q15048 493 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 ALG1LQ6GMV1 187 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 KYAT3Q6YP21 454 aaKnown RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms