RNA–Protein interactions for RNA: ENST00000493957.5

UBA3-211, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 3

Gene UBA3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-211	ENST00000493957	BCL2L1	Q07817	233 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	ITK	Q08881	620 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	TFDP2	Q14188	446 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	PDK1	Q15118	436 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	PRKD1	Q15139	912 aa	Predicted RBP	11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	RSPO4	Q2I0M5	234 aa	Predicted RBP	11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	ZC3H18	Q86VM9	953 aa	Known RBP	11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	SYCE1	Q8N0S2	351 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	TXLNB	Q8N3L3	684 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	RNF10	Q8N5U6	811 aa	Known RBP	11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	CEP76	Q8TAP6	659 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	ARRDC2	Q8TBH0	407 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	NSMCE1	Q8WV22	266 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	FATE1	Q969F0	183 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	HES6	Q96HZ4	224 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	SERAC1	Q96JX3	654 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	ZNF641	Q96N77	438 aa	Predicted RBP	11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	IL12RB2	Q99665	862 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	NUSAP1	Q9BXS6	441 aa	Known RBP	11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	OSBPL8	Q9BZF1	889 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	TSGA10	Q9BZW7	698 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	IL21R	Q9HBE5	538 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	AASDHPPT	Q9NRN7	309 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	SUSD2	Q9UGT4	822 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	ATP8A1	Q9Y2Q0	1164 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	COQ6	Q9Y2Z9	468 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	ZFC3H1	O60293	1989 aa	Known RBP	11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	TCRBV7S2A1N4T	A0A589	114 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	C4orf47	A7E2U8	309 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957		A8MX80	341 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	PPP1R12A	O14974	1030 aa	Predicted RBP	11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	HTRA2	O43464	458 aa	Predicted RBP	11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	MMP20	O60882	483 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	MMP2	P08253	660 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	PDHA1	P08559	390 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	HSPA9	P38646	679 aa	Known RBP	11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	MMP12	P39900	470 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	DPP6	P42658	865 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	CLDN2	P57739	230 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	COPS2	P61201	443 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	RACK1	P63244	317 aa	Known RBP	11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	OTUD4	Q01804	1114 aa	Known RBP	11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	RALGDS	Q12967	914 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	NOMO1	Q15155	1222 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	UGP2	Q16851	508 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	KIF19	Q2TAC6	998 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	PROX2	Q3B8N5	592 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	STPG1	Q5TH74	334 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	ALG1L	Q6GMV1	187 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	NAPEPLD	Q6IQ20	393 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	ZNF662	Q6ZS27	426 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	PRPF39	Q86UA1	669 aa	Known RBP	11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	BBS5	Q8N3I7	341 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	MINDY1	Q8N5J2	469 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	PDCD6IP	Q8WUM4	868 aa	Known RBP	11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	AGAP3	Q96P47	875 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	POLR1E	Q9GZS1	481 aa	Known RBP	11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	BRD8	Q9H0E9	1235 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	SNX11	Q9Y5W9	270 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	DNAH14	Q0VDD8	3507 aa		11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	GOLGA4	Q13439	2230 aa	Known RBP	11.74	□□□□□ -0.53
UBA3-211	ENST00000493957	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	MIF4GD	A9UHW6	222 aa	Known RBP	11.73	□□□□□ -0.53
UBA3-211	ENST00000493957		F5H423	210 aa	Predicted RBP	11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	APOC4-APOC2	K7ER74	178 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	NEMP1	O14524	444 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	TSPAN6	O43657	245 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	PAK4	O96013	591 aa	Predicted RBP	11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	CP	P00450	1065 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	APOC2	P02655	101 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	PTMA	P06454	111 aa	Known RBP	11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	XPA	P23025	273 aa	Predicted RBP	11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	PTPN3	P26045	913 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	PTPN7	P35236	360 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	GRIA4	P48058	902 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	AFF3	P51826	1226 aa	Known RBP	11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	RPS21	P63220	83 aa	Known RBP	11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	CCDC15	Q0P6D6	951 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	WASHC5	Q12768	1159 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	GRM3	Q14832	879 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	UAP1L1	Q3KQV9	507 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	TMEM52B	Q4KMG9	183 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	SETMAR	Q53H47	684 aa	Predicted RBP	11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	PRAMEF14	Q5SWL7	426 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	CFAP58	Q5T655	872 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	KIAA1161	Q6NSJ0	714 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	NEK5	Q6P3R8	708 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	BRAT1	Q6PJG6	821 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	GCNT7	Q6ZNI0	430 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	RABEPK	Q7Z6M1	372 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	TMEM145	Q8NBT3	493 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	ACTL9	Q8TC94	416 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	P3H4	Q92791	437 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	RAB7B	Q96AH8	199 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	FEM1C	Q96JP0	617 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	QKI	Q96PU8	341 aa	Known RBP eCLIP	11.73	□□□□□ -0.53	1e-6	■■■■□ 23.1
UBA3-211	ENST00000493957	KLF6	Q99612	283 aa	Predicted RBP	11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	C1QTNF2	Q9BXJ5	285 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	SLC17A9	Q9BYT1	436 aa		11.73	□□□□□ -0.53
UBA3-211	ENST00000493957	TMEM9B	Q9NQ34	198 aa		11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms