RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 CIR1Q86X95 450 aaPredicted RBP6.86□□□□□ -1.31
VPS52-219ENST00000493379 SLITRK4Q8IW52 837 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 MAP7D3Q8IWC1 876 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 SULF2Q8IWU5 870 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 ARHGAP12Q8IWW6 846 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 CHPFQ8IZ52 775 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 TXLNBQ8N3L3 684 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 SH2D3CQ8N5H7 860 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 SPC24Q8NBT2 197 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 OR2T3Q8NH03 318 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 STK35Q8TDR2 534 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 CASKIN2Q8WXE0 1202 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 GATAD2BQ8WXI9 593 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 SORCS1Q8WY21 1168 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 MRGPRX1Q96LB2 322 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 CSPG4P5Q96PW8 444 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 ZNF670Q9BS34 389 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 MIR1-1HGQ9H1L0 117 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 RSPH9Q9H1X1 276 aaPredicted RBP6.86□□□□□ -1.31
VPS52-219ENST00000493379 ZWILCHQ9H900 591 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 PDFQ9HBH1 243 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 PCDH18Q9HCL0 1135 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 USP36Q9P275 1121 aaKnown RBP6.86□□□□□ -1.31
VPS52-219ENST00000493379 VPS51Q9UID3 782 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 SCML1Q9UN30 329 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 SLC8A2Q9UPR5 921 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 DUSP10Q9Y6W6 482 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 AHCTF1Q8WYP5 2266 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 ATG2BQ96BY7 2078 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 LRBAP50851 2863 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 DOCK4Q8N1I0 1966 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 EDDM13A0A1B0GTR0 161 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 FAM221AA4D161 298 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 GOLGA6L6A8MZA4 724 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 RASA4BC9J798 803 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 EEF2KO00418 725 aaKnown RBP6.85□□□□□ -1.31
VPS52-219ENST00000493379 RASA4O43374 803 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 PSTPIP1O43586 416 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 SLC28A2O43868 658 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 CREB3O43889 395 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 RAMP2O60895 175 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 ZNF217O75362 1048 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 RGS9O75916 674 aaPredicted RBP6.85□□□□□ -1.31
VPS52-219ENST00000493379 ALDH1A2O94788 518 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 PEX11BO96011 259 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 MT-CO1P00395 513 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 RHOCP08134 193 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 VSIG8P0DPA2 414 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 SRCP12931 536 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 HOXB2P14652 356 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 GOT1P17174 413 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 COMTP21964 271 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 ALAS2P22557 587 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 KDELR1P24390 212 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 PRKCHP24723 683 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 ARNTP27540 789 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 MPLP40238 635 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 P2RY2P41231 377 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 CSNK1DP48730 415 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 GEMIN4P57678 1058 aaKnown RBP6.85□□□□□ -1.31
VPS52-219ENST00000493379 TPI1P60174 286 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 FAM193AP78312 1265 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 ARF5P84085 180 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 ZNF33AQ06730 810 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 NSUN2Q08J23 767 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS52-219ENST00000493379 DPYSL3Q14195 570 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 MESDQ14696 234 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 LRRC14Q15048 493 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 POLD3Q15054 466 aaPredicted RBP6.85□□□□□ -1.31
VPS52-219ENST00000493379 KCNT1Q5JUK3 1230 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 SLC9A4Q6AI14 798 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 RETSATQ6NUM9 610 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 NT5DC3Q86UY8 548 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 KBTBD6Q86V97 674 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 CPNE8Q86YQ8 564 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 RHOT1Q8IXI2 618 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 CACTIN-AS1Q8N1I8 211 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 CCDC33Q8N5R6 958 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 PQLC3Q8N755 202 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 ACRBPQ8NEB7 543 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 TMIEQ8NEW7 156 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 MDGA1Q8NFP4 955 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 PCDH19Q8TAB3 1148 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 GRIN3AQ8TCU5 1115 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 RAPGEF5Q92565 580 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 NKD1Q969G9 470 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 ZNF599Q96NL3 588 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 TSGA13Q96PP4 275 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 RNF157Q96PX1 679 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 CIPCQ9C0C6 399 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 SLC39A8Q9C0K1 460 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 MKRN2Q9H000 416 aaKnown RBP6.85□□□□□ -1.31
VPS52-219ENST00000493379 DHX35Q9H5Z1 703 aaKnown RBP6.85□□□□□ -1.31
VPS52-219ENST00000493379 POLR3BQ9NW08 1133 aaPredicted RBP6.85□□□□□ -1.31
VPS52-219ENST00000493379 GPATCH2LQ9NWQ4 482 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 DDX56Q9NY93 547 aaKnown RBP6.85□□□□□ -1.31
VPS52-219ENST00000493379 MFHAS1Q9Y4C4 1052 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 PCDHA3Q9Y5H8 950 aa6.85□□□□□ -1.31
VPS52-219ENST00000493379 LNP1A1A4G5 178 aa6.84□□□□□ -1.31
VPS52-219ENST00000493379 GRID2IPA4D2P6 1211 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms