RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ASIC5Q9NY37 505 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 PSD3Q9NYI0 1048 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 LRIT1Q9P2V4 623 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 OSGIN1Q9UJX0 560 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 CARD8Q9Y2G2 431 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 SPATA31A5Q5VU36 1347 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 SPATA31A6Q5VVP1 1343 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 SPATA31A7Q8IWB4 1347 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 CENPVL1A0A0U1RR11 272 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 TYW5A2RUC4 315 aaKnown RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 C19orf81C9J6K1 198 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 FAM157AC9JC47 383 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 GPC4O75487 556 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 PENKP01210 267 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 TPOP07202 933 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 EGR2P11161 476 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 PCNAP12004 261 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 PTPN2P17706 415 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 PRKCIP41743 596 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 CYP4F2P78329 520 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 TFAP4Q01664 338 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 DLG2Q15700 870 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 PLK5Q496M5 336 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 TMEM198Q66K66 360 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 VSTM1Q6UX27 236 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 SEPT14Q6ZU15 432 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 CAMKMTQ7Z624 323 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 C16orf71Q8IYS4 520 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 SCYL3Q8IZE3 742 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 SLC44A3Q8N4M1 653 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 PAQR4Q8N4S7 273 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 TC2NQ8N9U0 490 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 PTPMT1Q8WUK0 201 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 FAM162AQ96A26 154 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 LRRC59Q96AG4 307 aaKnown RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 WWC2-AS2Q96NR7 200 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 FRG2BQ96QU4 278 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 CDRT15Q96T59 188 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 ACAT2Q9BWD1 397 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 A0A1B0GVM2 712 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 TCRBV21S2A2A0A5A6 115 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 C1orf226A1L170 272 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 IPO8O15397 1037 aaKnown RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 RECQL5O94762 991 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 SLCO2B1O94956 709 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 BCL10O95999 233 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 HOXB5P09067 269 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 ACRV1P26436 265 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 KRT2P35908 639 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 TCF7P36402 384 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 CCT8P50990 548 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 CLCN5P51795 746 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 SLC18A2Q05940 514 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 RALGDSQ12967 914 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 COASYQ13057 564 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 SMC1AQ14683 1233 aaKnown RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 LARS2Q15031 903 aaKnown RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 HYAL4Q2M3T9 481 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 PCGF3Q3KNV8 242 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 TMEM63BQ5T3F8 832 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 LRIF1Q5T3J3 769 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 KRT79Q5XKE5 535 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 TBC1D9BQ66K14 1250 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 KIAA0895LQ68EN5 471 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 CES5AQ6NT32 575 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 FBXO42Q6P3S6 717 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 ALKBH5Q6P6C2 394 aaKnown RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 FBXO46Q6PJ61 603 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 ERN2Q76MJ5 926 aaKnown RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 NOXA1Q86UR1 476 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 IQCHQ86VS3 1027 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 OR14L1PQ8NHC6 308 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 TMEM170AQ8WVE7 144 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 LINC00615Q96LM1 132 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 CFAP57Q96MR6 1250 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 C1QTNF1Q9BXJ1 281 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 GOLPH3LQ9H4A5 285 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 ZNF304Q9HCX3 659 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 DDX43Q9NXZ2 648 aaKnown RBP4.79□□□□□ -1.64
VPS13A-212ENST00000493341 KLHL20Q9Y2M5 609 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 MAU2Q9Y6X3 613 aa4.79□□□□□ -1.64
VPS13A-212ENST00000493341 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 DDTLA6NHG4 134 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 SPRY1O43609 319 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 SYNCRIPO60506 623 aaKnown RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 ATP2C2O75185 946 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 PTMAP06454 111 aaKnown RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 TACR2P21452 398 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 SLC25A3Q00325 362 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 SORDQ00796 357 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 C17orf67Q0P5P2 114 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 ICAM4Q14773 271 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 SYTL3Q4VX76 610 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 AARS2Q5JTZ9 985 aaKnown RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 HIST2H2BCQ6DN03 193 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 HIST2H2BDQ6DRA6 164 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 ZNF585AQ6P3V2 769 aa4.78□□□□□ -1.64
VPS13A-212ENST00000493341 RBPMS2Q6ZRY4 209 aaKnown RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 PEG10Q86TG7 708 aaKnown RBP4.78□□□□□ -1.64
VPS13A-212ENST00000493341 HAPLN4Q86UW8 402 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms