RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 RALGDSQ12967 914 aa24.85■■□□□ 1.57
UPF3A-209ENST00000492270 PDE1CQ14123 709 aaPredicted RBP24.85■■□□□ 1.57
UPF3A-209ENST00000492270 CNDP2Q96KP4 475 aaKnown RBP24.85■■□□□ 1.57
UPF3A-209ENST00000492270 RNF157Q96PX1 679 aa24.85■■□□□ 1.57
UPF3A-209ENST00000492270 NT5MQ9NPB1 228 aa24.85■■□□□ 1.57
UPF3A-209ENST00000492270 SPTY2D1-AS1A0A0U1RR47 76 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 KRT1P04264 644 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 COMTP21964 271 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 TRAF2Q12933 501 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 DNAJC3Q13217 504 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 IRF4Q15306 451 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 CCDC157Q569K6 752 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 DCP2Q8IU60 420 aaKnown RBP24.84■■□□□ 1.57
UPF3A-209ENST00000492270 BBS5Q8N3I7 341 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 SLC25A45Q8N413 288 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 TEX26Q8N6G2 289 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 GOLPH3Q9H4A6 298 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 DNAJC28Q9NX36 388 aa24.84■■□□□ 1.57
UPF3A-209ENST00000492270 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP24.83■■□□□ 1.57
UPF3A-209ENST00000492270 SOWAHDA6NJG2 315 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 PIAS2O75928 621 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 DKK1O94907 266 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 LDOC1O95751 146 aaPredicted RBP24.83■■□□□ 1.57
UPF3A-209ENST00000492270 DGKAP23743 735 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 LRRC49Q8IUZ0 686 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 CCDC170Q8IYT3 715 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 PLD5Q8N7P1 536 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 PDCD6IPQ8WUM4 868 aaKnown RBP24.83■■□□□ 1.57
UPF3A-209ENST00000492270 PANX2Q96RD6 677 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 C1QTNF7Q9BXJ2 289 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 DTLQ9NZJ0 730 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 NEUROG3Q9Y4Z2 214 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 PCDHA13Q9Y5I0 950 aa24.83■■□□□ 1.57
UPF3A-209ENST00000492270 A8MX80 341 aa24.82■■□□□ 1.56
UPF3A-209ENST00000492270 ENC1O14682 589 aa24.82■■□□□ 1.56
UPF3A-209ENST00000492270 HTRA2O43464 458 aaPredicted RBP24.82■■□□□ 1.56
UPF3A-209ENST00000492270 SOCS5O75159 536 aa24.82■■□□□ 1.56
UPF3A-209ENST00000492270 NOP2P46087 812 aaKnown RBP24.82■■□□□ 1.56
UPF3A-209ENST00000492270 IFI16Q16666 785 aaKnown RBP24.82■■□□□ 1.56
UPF3A-209ENST00000492270 WSCD2Q2TBF2 565 aa24.82■■□□□ 1.56
UPF3A-209ENST00000492270 DPPA4Q7L190 304 aa24.82■■□□□ 1.56
UPF3A-209ENST00000492270 PARGQ86W56 976 aa24.82■■□□□ 1.56
UPF3A-209ENST00000492270 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP24.82■■□□□ 1.56
UPF3A-209ENST00000492270 MAML1Q92585 1016 aa24.82■■□□□ 1.56
UPF3A-209ENST00000492270 RNF25Q96BH1 459 aaPredicted RBP24.82■■□□□ 1.56
UPF3A-209ENST00000492270 TMEM121BQ9BXQ6 578 aaPredicted RBP24.82■■□□□ 1.56
UPF3A-209ENST00000492270 KLF15Q9UIH9 416 aa24.82■■□□□ 1.56
UPF3A-209ENST00000492270 PNMA8BQ9ULN7 279 aaPredicted RBP24.82■■□□□ 1.56
UPF3A-209ENST00000492270 ASPMQ8IZT6 3477 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 C1QTNF9BB2RNN3 333 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 TRIM38O00635 465 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 MATN3O15232 486 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 FFAR2O15552 330 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 SPOPO43791 374 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 LZTS3O60299 673 aaPredicted RBP24.81■■□□□ 1.56
UPF3A-209ENST00000492270 CPP00450 1065 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 C1QTNF9P0C862 333 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 FECHP22830 423 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 CCNCP24863 283 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 CYLC1P35663 651 aaPredicted RBP24.81■■□□□ 1.56
UPF3A-209ENST00000492270 SLC1A1P43005 524 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 HADHBP55084 474 aaKnown RBP24.81■■□□□ 1.56
UPF3A-209ENST00000492270 POLR2LP62875 67 aaKnown RBP24.81■■□□□ 1.56
UPF3A-209ENST00000492270 EIF2B5Q13144 721 aaKnown RBP24.81■■□□□ 1.56
UPF3A-209ENST00000492270 LRRC14Q15048 493 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 LRRC38Q5VT99 294 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 TIGD7Q6NT04 549 aaPredicted RBP24.81■■□□□ 1.56
UPF3A-209ENST00000492270 LIPIQ6XZB0 460 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 RHOT1Q8IXI2 618 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 IFT43Q96FT9 208 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 TSGA13Q96PP4 275 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 SEMA3CQ99985 751 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 B4GALT6Q9UBX8 382 aa24.81■■□□□ 1.56
UPF3A-209ENST00000492270 MYLKQ15746 1914 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 CSF2P04141 144 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 ELFN1P0C7U0 828 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 GIMD1P0DJR0 217 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 NME1P15531 152 aaKnown RBP24.8■■□□□ 1.56
UPF3A-209ENST00000492270 GM2AP17900 193 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 THOP1P52888 689 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 ITKQ08881 620 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 IHHQ14623 411 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 PTPRRQ15256 657 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 SPA17Q15506 151 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 FAM182AQ5T1J6 154 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 SLC9A4Q6AI14 798 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 NPNTQ6UXI9 565 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 HDAC11Q96DB2 347 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 LGMNQ99538 433 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 HEY1Q9Y5J3 304 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 WDFY3Q8IZQ1 3526 aa24.8■■□□□ 1.56
UPF3A-209ENST00000492270 GOLGA4Q13439 2230 aaKnown RBP24.8■■□□□ 1.56
UPF3A-209ENST00000492270 ZNF487B1APH4 448 aa24.79■■□□□ 1.56
UPF3A-209ENST00000492270 SIGLEC6O43699 453 aa24.79■■□□□ 1.56
UPF3A-209ENST00000492270 NDUFA10O95299 355 aa24.79■■□□□ 1.56
UPF3A-209ENST00000492270 HLA-DQB2P05538 268 aa24.79■■□□□ 1.56
UPF3A-209ENST00000492270 DSC2Q02487 901 aa24.79■■□□□ 1.56
UPF3A-209ENST00000492270 AGERQ15109 404 aa24.79■■□□□ 1.56
UPF3A-209ENST00000492270 RALGPS1Q5JS13 557 aa24.79■■□□□ 1.56
UPF3A-209ENST00000492270 MFSD7Q6UXD7 560 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms