RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 EPN1Q9Y6I3 576 aaPredicted RBP18.26■□□□□ 0.51
COL9A3-214ENST00000490398 FPGTO14772 594 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 HTRA2O43464 458 aaPredicted RBP18.25■□□□□ 0.51
COL9A3-214ENST00000490398 MAGEC1O60732 1142 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 NDUFA10O95299 355 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 NOP2P46087 812 aaKnown RBP18.25■□□□□ 0.51
COL9A3-214ENST00000490398 ARRB1P49407 418 aaPredicted RBP18.25■□□□□ 0.51
COL9A3-214ENST00000490398 RENBPP51606 427 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 HADHBP55084 474 aaKnown RBP18.25■□□□□ 0.51
COL9A3-214ENST00000490398 SHC2P98077 582 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 HNRNPDQ14103 355 aaKnown RBP18.25■□□□□ 0.51
COL9A3-214ENST00000490398 IRF4Q15306 451 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 WSCD2Q2TBF2 565 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 CFAP58Q5T655 872 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 MFSD7Q6UXD7 560 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 TMEM139Q8IV31 216 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 ACRBPQ8NEB7 543 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 SCNM1Q9BWG6 230 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 DUSP10Q9Y6W6 482 aa18.25■□□□□ 0.51
COL9A3-214ENST00000490398 ACACBO00763 2458 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 A0A0U1RQJ8 604 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 A0A0U1RQS6 177 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 TRIM38O00635 465 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 MATN3O15232 486 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 GIMD1P0DJR0 217 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 SUOXP51687 545 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 ADCY2Q08462 1091 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 ELP6Q0PNE2 266 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 DNAJC3Q13217 504 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 PDE1CQ14123 709 aaPredicted RBP18.24■□□□□ 0.51
COL9A3-214ENST00000490398 LRRC38Q5VT99 294 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 SLC9A4Q6AI14 798 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 ERAP2Q6P179 960 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 RAB44Q7Z6P3 723 aaPredicted RBP18.24■□□□□ 0.51
COL9A3-214ENST00000490398 MARCH9Q86YJ5 346 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 RHOT1Q8IXI2 618 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 OXR1Q8N573 874 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 SPC24Q8NBT2 197 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 DENND6BQ8NEG7 585 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 PDCD6IPQ8WUM4 868 aaKnown RBP18.24■□□□□ 0.51
COL9A3-214ENST00000490398 FUBP1Q96AE4 644 aaKnown RBP18.24■□□□□ 0.51
COL9A3-214ENST00000490398 TSGA13Q96PP4 275 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 LGMNQ99538 433 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 SEMA3CQ99985 751 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 TCEAL2Q9H3H9 227 aaPredicted RBP18.24■□□□□ 0.51
COL9A3-214ENST00000490398 HEY1Q9Y5J3 304 aa18.24■□□□□ 0.51
COL9A3-214ENST00000490398 SPTY2D1-AS1A0A0U1RR47 76 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.23■□□□□ 0.51
COL9A3-214ENST00000490398 SPOPO43791 374 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 DKK1O94907 266 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 HLA-DQB2P05538 268 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 PDHA1P08559 390 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 KRT10P13645 584 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 DGKAP23743 735 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 CCNCP24863 283 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 CYLC1P35663 651 aaPredicted RBP18.23■□□□□ 0.51
COL9A3-214ENST00000490398 HSPA9P38646 679 aaKnown RBP18.23■□□□□ 0.51
COL9A3-214ENST00000490398 SLC1A1P43005 524 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 RABIFP47224 123 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 DYNLT1P63172 113 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 DSC2Q02487 901 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 NIPAL4Q0D2K0 466 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 ZBTB17Q13105 803 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 EIF2B5Q13144 721 aaKnown RBP18.23■□□□□ 0.51
COL9A3-214ENST00000490398 SPA17Q15506 151 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 TAZQ16635 292 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 IFI16Q16666 785 aaKnown RBP18.23■□□□□ 0.51
COL9A3-214ENST00000490398 DPPA4Q7L190 304 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 ZSCAN30Q86W11 494 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 RFX6Q8HWS3 928 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 TMTC1Q8IUR5 882 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 LRRC49Q8IUZ0 686 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 PELI3Q8N2H9 469 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 PLA2G15Q8NCC3 412 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 NSMCE1Q8WV22 266 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 KRT35Q92764 455 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 CDC6Q99741 560 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 LACRTQ9GZZ8 138 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 RBM22Q9NW64 420 aaKnown RBP eCLIP18.23■□□□□ 0.51
COL9A3-214ENST00000490398 DNAJC28Q9NX36 388 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 B4GALT6Q9UBX8 382 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 FREM2Q5SZK8 3169 aa18.23■□□□□ 0.51
COL9A3-214ENST00000490398 TPRP12270 2363 aaKnown RBP18.22■□□□□ 0.51
COL9A3-214ENST00000490398 KCNK1O00180 336 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 SOCS5O75159 536 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 PIAS2O75928 621 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 MYF5P13349 255 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 CLDN6P56747 220 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 ITKQ08881 620 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 CCDC157Q569K6 752 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 KCTD16Q68DU8 428 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 LIPIQ6XZB0 460 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 PAF1Q8N7H5 531 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 CNTD1Q8N815 330 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 CCNYQ8ND76 341 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 TPCN2Q8NHX9 752 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 ARRDC2Q8TBH0 407 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 ADAMTS14Q8WXS8 1223 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 CNDP2Q96KP4 475 aaKnown RBP18.22■□□□□ 0.51
COL9A3-214ENST00000490398 TMEM121BQ9BXQ6 578 aaPredicted RBP18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms