RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ATL2Q8NHH9 583 aa14.09□□□□□ -0.15
VARS-227ENST00000489979 PDXPQ96GD0 296 aa14.09□□□□□ -0.15
VARS-227ENST00000489979 WDR92Q96MX6 357 aa14.09□□□□□ -0.15
VARS-227ENST00000489979 RBM15Q96T37 977 aaKnown RBP eCLIP14.09□□□□□ -0.15
VARS-227ENST00000489979 FUCA2Q9BTY2 467 aa14.09□□□□□ -0.15
VARS-227ENST00000489979 MAGEB5Q9BZ81 275 aa14.09□□□□□ -0.15
VARS-227ENST00000489979 TMEM248Q9NWD8 314 aa14.09□□□□□ -0.15
VARS-227ENST00000489979 ANKMY1Q9P2S6 941 aa14.09□□□□□ -0.15
VARS-227ENST00000489979 DKK3Q9UBP4 350 aa14.09□□□□□ -0.15
VARS-227ENST00000489979 SDK2Q58EX2 2172 aa14.09□□□□□ -0.15
VARS-227ENST00000489979 ZFC3H1O60293 1989 aaKnown RBP14.09□□□□□ -0.15
VARS-227ENST00000489979 FAM72CH0Y354 149 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 INSIG1O15503 277 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 PCCBP05166 539 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 CYP11B1P15538 503 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 PNLIPP16233 465 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 CD82P27701 267 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 ADRA1BP35368 520 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 RHOAP61586 193 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 ELP6Q0PNE2 266 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 CDO1Q16878 200 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 FAM72AQ5TYM5 149 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 FAM72DQ6L9T8 149 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 OGFOD3Q6PK18 319 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 TAF8Q7Z7C8 310 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 FAM72BQ86X60 149 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 PTRH1Q86Y79 214 aaKnown RBP14.08□□□□□ -0.16
VARS-227ENST00000489979 SLITRK4Q8IW52 837 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 FAM46DQ8NEK8 389 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 JPH3Q8WXH2 748 aaPredicted RBP14.08□□□□□ -0.16
VARS-227ENST00000489979 TBC1D31Q96DN5 1066 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 SEMA6CQ9H3T2 930 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 RETREG1Q9H6L5 497 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 METTL5Q9NRN9 209 aaKnown RBP14.08□□□□□ -0.16
VARS-227ENST00000489979 LRIT1Q9P2V4 623 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 SEPT3Q9UH03 358 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 NEU3Q9UQ49 428 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 MFHAS1Q9Y4C4 1052 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 NBASA2RRP1 2371 aa14.08□□□□□ -0.16
VARS-227ENST00000489979 ZSCAN5CA6NGD5 496 aaPredicted RBP14.07□□□□□ -0.16
VARS-227ENST00000489979 B4DGG1 531 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 LRIG2O94898 1065 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 PIGNO95427 931 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 ARHGEF7Q14155 803 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 UBAP2LQ14157 1087 aaKnown RBP14.07□□□□□ -0.16
VARS-227ENST00000489979 C16orf72Q14CZ0 275 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 C15orf59Q2T9L4 293 aaPredicted RBP14.07□□□□□ -0.16
VARS-227ENST00000489979 C14orf28Q4W4Y0 310 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 ARCQ7LC44 396 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 IRF2BP1Q8IU81 584 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 CPA5Q8WXQ8 436 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 OR1E3Q8WZA6 343 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 HMCESQ96FZ2 354 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 KLC2Q9H0B6 622 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 PCDH12Q9NPG4 1184 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 DGKBQ9Y6T7 804 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 NBPF19A0A087WUL8 3843 aa14.07□□□□□ -0.16
VARS-227ENST00000489979 PLEKP08567 350 aaPredicted RBP14.06□□□□□ -0.16
VARS-227ENST00000489979 MTIF2P46199 727 aaKnown RBP14.06□□□□□ -0.16
VARS-227ENST00000489979 LIG3P49916 1009 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 SUOXP51687 545 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 MTM1Q13496 603 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 RAPGEF1Q13905 1077 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 HLTFQ14527 1009 aaKnown RBP eCLIP14.06□□□□□ -0.16
VARS-227ENST00000489979 UGP2Q16851 508 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 SKIDA1Q1XH10 827 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 CCDC14Q49A88 953 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 MAP9Q49MG5 647 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 INO80DQ53TQ3 878 aaPredicted RBP14.06□□□□□ -0.16
VARS-227ENST00000489979 TMEM164Q5U3C3 297 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 NAA35Q5VZE5 725 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 PLA2G15Q8NCC3 412 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 MSANTD4Q8NCY6 345 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 ZNF564Q8TBZ8 553 aaPredicted RBP14.06□□□□□ -0.16
VARS-227ENST00000489979 RXFP2Q8WXD0 754 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 CASKIN2Q8WXE0 1202 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 EXOC2Q96KP1 924 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 NCAPGQ9BPX3 1015 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 SLC12A9Q9BXP2 914 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 TMEM168Q9H0V1 697 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 ADNPQ9H2P0 1102 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 NOL6Q9H6R4 1146 aaKnown RBP14.06□□□□□ -0.16
VARS-227ENST00000489979 RDH14Q9HBH5 336 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 MRPL40Q9NQ50 206 aaKnown RBP14.06□□□□□ -0.16
VARS-227ENST00000489979 RWDD2AQ9UIY3 292 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 DAAM1Q9Y4D1 1078 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 LRRK2Q5S007 2527 aa14.06□□□□□ -0.16
VARS-227ENST00000489979 TMEM202A6NGA9 273 aa14.05□□□□□ -0.16
VARS-227ENST00000489979 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.05□□□□□ -0.16
VARS-227ENST00000489979 STMND1H3BQB6 276 aa14.05□□□□□ -0.16
VARS-227ENST00000489979 LSM8O95777 96 aaKnown RBP14.05□□□□□ -0.16
VARS-227ENST00000489979 NTRK1P04629 796 aa14.05□□□□□ -0.16
VARS-227ENST00000489979 PRKCGP05129 697 aa14.05□□□□□ -0.16
VARS-227ENST00000489979 CCL4P13236 92 aa14.05□□□□□ -0.16
VARS-227ENST00000489979 NOMO3P69849 1222 aa14.05□□□□□ -0.16
VARS-227ENST00000489979 B4GALNT1Q00973 533 aa14.05□□□□□ -0.16
VARS-227ENST00000489979 AGERQ15109 404 aa14.05□□□□□ -0.16
VARS-227ENST00000489979 SPECC1LQ69YQ0 1117 aa14.05□□□□□ -0.16
VARS-227ENST00000489979 DPY19L2P1Q6NXN4 242 aa14.05□□□□□ -0.16
VARS-227ENST00000489979 ERAP2Q6P179 960 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms