RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	TPTE	P56180	551 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	IRX6	P78412	446 aa	Predicted RBP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	POU5F1B	Q06416	359 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PPP2R5C	Q13362	524 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NONO	Q15233	471 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ANGPT1	Q15389	498 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RBMS2	Q15434	407 aa	Known RBP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	FAM187B	Q17R55	369 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TBC1D25	Q3MII6	688 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SHC4	Q6S5L8	630 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ZNF813	Q6ZN06	617 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CAND1	Q86VP6	1230 aa	Known RBP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	C4orf19	Q8IY42	314 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GPR65	Q8IYL9	337 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	IZUMO1	Q8IYV9	350 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RNF168	Q8IYW5	571 aa	Predicted RBP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	BLID	Q8IZY5	108 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ADSSL1	Q8N142	457 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PRSS3P2	Q8NHM4	247 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	BRIX1	Q8TDN6	353 aa	Known RBP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TCP11	Q8WWU5	503 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PRPF31	Q8WWY3	499 aa	Known RBP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PSPC1	Q8WXF1	523 aa	Known RBP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	STAM	Q92783	540 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	HPS3	Q969F9	1004 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GJA10	Q969M2	543 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ZNF274	Q96GC6	653 aa	Predicted RBP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	FAM20A	Q96MK3	541 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NLRP4	Q96MN2	994 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	JAKMIP1	Q96N16	626 aa	Known RBP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NT5C1B	Q96P26	610 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RPS6KC1	Q96S38	1066 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CGRRF1	Q99675	332 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PLEKHA4	Q9H4M7	779 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DHX33	Q9H6R0	707 aa	Known RBP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MINDY3	Q9H8M7	445 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	WDR6	Q9NNW5	1121 aa	Known RBP	4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	EPS15L1	Q9UBC2	864 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MED16	Q9Y2X0	877 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	COL4A3BP	Q9Y5P4	624 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CACNA1B	Q00975	2339 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SPTBN2	O15020	2390 aa		4.35	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MYH15	Q9Y2K3	1946 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GPR179	Q6PRD1	2367 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	VPS13A	Q96RL7	3174 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MYO15A	Q9UKN7	3530 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TBX3	O15119	743 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TEX28	O15482	410 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	EPB41L2	O43491	1005 aa	Known RBP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	N4BP1	O75113	896 aa	Known RBP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	REC8	O95072	547 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DEXI	O95424	95 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GLUD1	P00367	558 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	UROD	P06132	367 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CHRM5	P08912	532 aa	Predicted RBP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GCFC2	P16383	781 aa	Known RBP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GLUD2	P49448	558 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PDE6C	P51160	858 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	AK2	P54819	239 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PTEN	P60484	403 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DSC1	Q08554	894 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NCBP1	Q09161	790 aa	Known RBP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	LAMTOR4	Q0VGL1	99 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MXD4	Q14582	209 aa	Predicted RBP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NPY5R	Q15761	445 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	C10orf25	Q5T742	122 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PLA2G4F	Q68DD2	849 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NOTUM	Q6P988	496 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CPLX2	Q6PUV4	134 aa	Known RBP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RUFY3	Q7L099	469 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CENPQ	Q7L2Z9	268 aa	Predicted RBP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	OTUD6A	Q7L8S5	288 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ADAMTS15	Q8TE58	950 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TMEM171	Q8WVE6	324 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	OSCP1	Q8WVF1	389 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TMEM143	Q96AN5	459 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CTHRC1	Q96CG8	243 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CCDC51	Q96ER9	411 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	HSPBAP1	Q96EW2	488 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CEP170P1	Q96L14	293 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MMS19	Q96T76	1030 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GAD1	Q99259	594 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NAP1L4	Q99733	375 aa	Known RBP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	HERC2P3	Q9BVR0	1158 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	COLEC11	Q9BWP8	271 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NT5C3A	Q9H0P0	336 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	KCNMB3	Q9NPA1	279 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MARCH5	Q9NX47	278 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ZDHHC7	Q9NXF8	308 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	FNIP2	Q9P278	1114 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DDX25	Q9UHL0	483 aa	Known RBP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CLUH	O75153	1309 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NOTCH4	Q99466	2003 aa		4.34	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NCOR2	Q9Y618	2525 aa		4.34	□□□□□ -1.72
SNRNP40-205	ENST00000486941	VWA8	A3KMH1	1905 aa		4.33	□□□□□ -1.72
SNRNP40-205	ENST00000486941	ZMYM2	Q9UBW7	1377 aa		4.33	□□□□□ -1.72
SNRNP40-205	ENST00000486941		A0A1B0GUA9	196 aa		4.33	□□□□□ -1.72
SNRNP40-205	ENST00000486941	CCDC194	A0A1B0GVG4	234 aa		4.33	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms