RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 AADATQ8N5Z0 425 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 ATL2Q8NHH9 583 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 EXD1Q8NHP7 514 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 RAPGEF5Q92565 580 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 KLK6Q92876 244 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 COL26A1Q96A83 441 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 BIRC7Q96CA5 298 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 RMDN1Q96DB5 314 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 KLHDC7BQ96G42 594 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 ZNF419Q96HQ0 510 aaPredicted RBP8.12□□□□□ -1.11
USP40-216ENST00000485943 ZNF641Q96N77 438 aaPredicted RBP8.12□□□□□ -1.11
USP40-216ENST00000485943 FAM129BQ96TA1 746 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 HEMGNQ9BXL5 484 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 HDAC8Q9BY41 377 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 GOLPH3Q9H4A6 298 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 SUV39H2Q9H5I1 410 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 ZFAND3Q9H8U3 227 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 GDF3Q9NR23 364 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 KLHL8Q9P2G9 620 aaPredicted RBP8.12□□□□□ -1.11
USP40-216ENST00000485943 DNPEPQ9ULA0 475 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 TFR2Q9UP52 801 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.12□□□□□ -1.11
USP40-216ENST00000485943 ACTL7AQ9Y615 435 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 A0A1W2PPC4 97 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 A6NJY4 79 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 ZNF487B1APH4 448 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 H3BM21 787 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 MATN3O15232 486 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 INSIG1O15503 277 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 DFNA5O60443 496 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 ZMPSTE24O75844 475 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 ZIC2O95409 532 aaPredicted RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 FTCDO95954 541 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 GAS8O95995 478 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 IGLV3-19P01714 112 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 SLC4A1P02730 911 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 ELFN1P0C7U0 828 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 TIMP2P16035 220 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 ENGP17813 658 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 HTR1BP28222 390 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 LMAN1P49257 510 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 PPM1FP49593 454 aaPredicted RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 CCR5P51681 352 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 HADHBP55084 474 aaKnown RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 MAXP61244 160 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 RACK1P63244 317 aaKnown RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 IRX4P78413 519 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 NSUN2Q08J23 767 aaKnown RBP eCLIP8.11□□□□□ -1.11
USP40-216ENST00000485943 HNRNPDQ14103 355 aaKnown RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 PTK2BQ14289 1009 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 PUM1Q14671 1186 aaKnown RBP eCLIP8.11□□□□□ -1.11
USP40-216ENST00000485943 ACOX1Q15067 660 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 RPS6KA1Q15418 735 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 RSPO4Q2I0M5 234 aaPredicted RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 RALGPS1Q5JS13 557 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 ITPRIPL1Q6GPH6 555 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 TCEAL6Q6IPX3 200 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 NAPEPLDQ6IQ20 393 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 SLC23A3Q6PIS1 610 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 DGLUCYQ7Z3D6 616 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 HORMAD1Q86X24 394 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 SLC41A1Q8IVJ1 513 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 CDKL3Q8IVW4 592 aaPredicted RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 KATNAL2Q8IYT4 538 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 MINDY1Q8N5J2 469 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 NPWQ8N729 165 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 TRIM58Q8NG06 486 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 PCDH19Q8TAB3 1148 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 CCHCR1Q8TD31 782 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 SETD7Q8WTS6 366 aaKnown RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 UBE2Q2Q8WVN8 375 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 MAIP1Q8WWC4 291 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 TCEAL3Q969E4 200 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 ARRDC3Q96B67 414 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 HDAC11Q96DB2 347 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 AGAP3Q96P47 875 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 NUDCD1Q96RS6 583 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 SEMA3CQ99985 751 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 RTKNQ9BST9 563 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 WRAP53Q9BUR4 548 aaKnown RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 FSD1LQ9BXM9 530 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 ADGRE3Q9BY15 652 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 CPEB1Q9BZB8 566 aaKnown RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 GAREM1Q9H706 876 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 ETNK2Q9NVF9 386 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 SERGEFQ9UGK8 458 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 AMACRQ9UHK6 382 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 MOSPD1Q9UJG1 213 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 PILRBQ9UKJ0 227 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 SARDHQ9UL12 918 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 DNMT3AQ9Y6K1 912 aaPredicted RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 MUC22E2RYF6 1773 aaPredicted RBP8.11□□□□□ -1.11
USP40-216ENST00000485943 TRPM6Q9BX84 2022 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 NUMA1Q14980 2115 aa8.11□□□□□ -1.11
USP40-216ENST00000485943 FAM186AA6NE01 2351 aa8.1□□□□□ -1.11
USP40-216ENST00000485943 ADAMTS9Q9P2N4 1935 aa8.1□□□□□ -1.11
USP40-216ENST00000485943 A0A1B0GVT2 93 aa8.1□□□□□ -1.11
USP40-216ENST00000485943 A6NNZ2 444 aa8.1□□□□□ -1.11
USP40-216ENST00000485943 C4orf47A7E2U8 309 aa8.1□□□□□ -1.11
USP40-216ENST00000485943 UPK3BL1B0FP48 263 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms