RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 LIMA1Q9UHB6 759 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 EIF2B4Q9UI10 523 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 SLCO3A1Q9UIG8 710 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 VPS28Q9UK41 221 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 FZD4Q9ULV1 537 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 TBC1D30Q9Y2I9 924 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 SIK3Q9Y2K2 1263 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 ZNF281Q9Y2X9 895 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 FAM170AA1A519 330 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 FAM47DPA6NHR8 397 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 LRRC72A6NJI9 287 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 ALOX15BO15296 676 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 PSPNO60542 156 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 GJB3O75712 270 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 RNASEH2AO75792 299 aaKnown RBP6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 FSBPO95073 299 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 IL1BP01584 269 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 RHOCP08134 193 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 ZNF883P0CG24 379 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 CD59P13987 128 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 GOT1P17174 413 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 PI3P19957 117 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 C5AR1P21730 350 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 MMP8P22894 467 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 CD27P26842 260 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 SLC8A1P32418 973 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 FLT3P36888 993 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 NSFP46459 744 aaKnown RBP6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 PSMD8P48556 350 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 NUMBP49757 651 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 KRT83P78385 493 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 FMO1Q01740 532 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 UBXN1Q04323 297 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 SYCP1Q15431 976 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 ACCSLQ4AC99 568 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 TRNP1Q6NT89 227 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 BNIPLQ7Z465 357 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 DSG4Q86SJ6 1040 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 C14orf80Q86SX3 495 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 SETD3Q86TU7 594 aaPredicted RBP6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 ZNF683Q8IZ20 524 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 OR52K2Q8NGK3 314 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 SLC30A5Q8TAD4 765 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 FRS2Q8WU20 508 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 OR8D1Q8WZ84 308 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 PTPRN2Q92932 1015 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 ALG14Q96F25 216 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 ERGIC2Q96RQ1 377 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 HAPLN3Q96S86 360 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 NEUROG2Q9H2A3 272 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 GAREM1Q9H706 876 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 ANLNQ9NQW6 1124 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 METTL5Q9NRN9 209 aaKnown RBP6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 SERGEFQ9UGK8 458 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 ADAMTS1Q9UHI8 967 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 OR51B4Q9Y5P0 310 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 ACACBO00763 2458 aa6.96□□□□□ -1.3
CCDC88A-213ENST00000476903 IGLV3-10A0A075B6K4 115 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 SPAARA0A1B0GVQ0 90 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 A0A1B0GVT2 93 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 A0A1W2PPC4 97 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 DRGXA6NNA5 263 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 E9PAM4 449 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 C1QTNF3-AMACRE9PGA6 284 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 I6L893 689 aaPredicted RBP6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 SLC7A4O43246 635 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 SRGAP2O75044 1071 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 CNTN5O94779 1100 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 CALB1P05937 261 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 IGHV4-34P06331 123 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 CELA3BP08861 270 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 CCDC172P0C7W6 258 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 UNGP13051 313 aaPredicted RBP6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 VAV1P15498 845 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 CHRNB2P17787 502 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 OR1E1P30953 314 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 SDC4P31431 198 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 ETV3P41162 512 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 CSNK1EP49674 416 aaKnown RBP6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 CCR5P51681 352 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 GALCP54803 685 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 ADPRHP54922 357 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 GSCP56915 257 aaPredicted RBP6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 SIM1P81133 766 aaPredicted RBP6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 NCAPHQ15003 741 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 DLG2Q15700 870 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 HLA-BQ31612 363 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 ARL13BQ3SXY8 428 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 ALFQ53S48 1182 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 FAM46CQ5VWP2 391 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 NCEH1Q6PIU2 408 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 ZNF783Q6ZMS7 281 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 TFAP2DQ7Z6R9 452 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 ADAT2Q7Z6V5 191 aaKnown RBP6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 FAM131BQ86XD5 332 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 PHF13Q86YI8 300 aaPredicted RBP6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 NAXDQ8IW45 347 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 SH2D3CQ8N5H7 860 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 AADATQ8N5Z0 425 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms