RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 EDEM3Q9BZQ6 932 aa13.66□□□□□ -0.22
CHD3-209ENST00000473376 ATP13A3Q9H7F0 1226 aa13.66□□□□□ -0.22
CHD3-209ENST00000473376 MBNL1Q9NR56 388 aaKnown RBP13.66□□□□□ -0.22
CHD3-209ENST00000473376 ACSL6Q9UKU0 697 aa13.66□□□□□ -0.22
CHD3-209ENST00000473376 CCDC187A0A096LP49 1063 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 GJB6O95452 261 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 ITGA2BP08514 1039 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 C6P13671 934 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 CDK11BP21127 795 aaKnown RBP13.65□□□□□ -0.22
CHD3-209ENST00000473376 KELP23276 732 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 SERPINA4P29622 427 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 MMP12P39900 470 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 RENBPP51606 427 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 MAMLD1Q13495 774 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 IRF4Q15306 451 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 WSCD2Q2TBF2 565 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 ERMARDQ5T6L9 678 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 PHLDB2Q86SQ0 1253 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 PRR11Q96HE9 360 aaPredicted RBP13.65□□□□□ -0.22
CHD3-209ENST00000473376 ZNF599Q96NL3 588 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 GBP4Q96PP9 640 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 RBM15Q96T37 977 aaKnown RBP eCLIP13.65□□□□□ -0.22
CHD3-209ENST00000473376 APOOQ9BUR5 198 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 B3GNT4Q9C0J1 378 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 CLPBQ9H078 707 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 KLC2Q9H0B6 622 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 PCDH12Q9NPG4 1184 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 APPL1Q9UKG1 709 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 PNMA8BQ9ULN7 279 aaPredicted RBP13.65□□□□□ -0.22
CHD3-209ENST00000473376 SATB2Q9UPW6 733 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 ATP8A1Q9Y2Q0 1164 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 PCDHGA7Q9Y5G6 932 aa13.65□□□□□ -0.22
CHD3-209ENST00000473376 KALRNO60229 2985 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 PDE2AO00408 941 aaPredicted RBP13.64□□□□□ -0.23
CHD3-209ENST00000473376 MUSKO15146 869 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 RNF8O76064 485 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 CTSEP14091 401 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 NFKBIAP25963 317 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 TRIM23P36406 574 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 HSPA9P38646 679 aaKnown RBP13.64□□□□□ -0.23
CHD3-209ENST00000473376 KIAA1024LP59773 190 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 CXADRP78310 365 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 IL10RBQ08334 325 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 VAC14Q08AM6 782 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 SPIDRQ14159 915 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 NCAPHQ15003 741 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 ALG11Q2TAA5 492 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 CFAP58Q5T655 872 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 OGFOD3Q6PK18 319 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 XKR5Q6UX68 686 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 LEKR1Q6ZMV7 388 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 RBFAQ8N0V3 343 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 ATXN7L3BQ96GX2 97 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 PSKH2Q96QS6 385 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 CCDC3Q9BQI4 270 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 SEPT11Q9NVA2 429 aaKnown RBP13.64□□□□□ -0.23
CHD3-209ENST00000473376 AP4E1Q9UPM8 1137 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 DOLKQ9UPQ8 538 aa13.64□□□□□ -0.23
CHD3-209ENST00000473376 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.63□□□□□ -0.23
CHD3-209ENST00000473376 TMEM191CA6NGB0 347 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 GOLGA6L22H0YM25 854 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 BUB1BO60566 1050 aaPredicted RBP13.63□□□□□ -0.23
CHD3-209ENST00000473376 PALMO75781 387 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 C1QL1O75973 258 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 TNFP01375 233 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 MYF5P13349 255 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 TNFAIP3P21580 790 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 CCKBRP32239 447 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 LIG3P49916 1009 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 SRP54P61011 504 aaKnown RBP13.63□□□□□ -0.23
CHD3-209ENST00000473376 AP1S1P61966 158 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 INPP5AQ14642 412 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 CLPPQ16740 277 aaPredicted RBP13.63□□□□□ -0.23
CHD3-209ENST00000473376 TSR1Q2NL82 804 aaKnown RBP13.63□□□□□ -0.23
CHD3-209ENST00000473376 RALGPS1Q5JS13 557 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 PERM1Q5SV97 790 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 RFX8Q6ZV50 586 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 SRLQ86TD4 932 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 WDR92Q96MX6 357 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 TMEM74Q96NL1 305 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 BPIFA3Q9BQP9 254 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 WRAP53Q9BUR4 548 aaKnown RBP13.63□□□□□ -0.23
CHD3-209ENST00000473376 STRADBQ9C0K7 418 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 NAT10Q9H0A0 1025 aaKnown RBP13.63□□□□□ -0.23
CHD3-209ENST00000473376 HSD3B7Q9H2F3 369 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 TCEAL2Q9H3H9 227 aaPredicted RBP13.63□□□□□ -0.23
CHD3-209ENST00000473376 AIPL1Q9NZN9 384 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 KLQ9UEF7 1012 aa13.63□□□□□ -0.23
CHD3-209ENST00000473376 TDRD6O60522 2096 aaKnown RBP13.63□□□□□ -0.23
CHD3-209ENST00000473376 HELZ2Q9BYK8 2649 aaKnown RBP13.62□□□□□ -0.23
CHD3-209ENST00000473376 A0A1W2PNU3 283 aaPredicted RBP13.62□□□□□ -0.23
CHD3-209ENST00000473376 FAM170AA1A519 330 aa13.62□□□□□ -0.23
CHD3-209ENST00000473376 J3KR12 359 aa13.62□□□□□ -0.23
CHD3-209ENST00000473376 K7ENP7 123 aa13.62□□□□□ -0.23
CHD3-209ENST00000473376 CACNB4O00305 520 aaPredicted RBP13.62□□□□□ -0.23
CHD3-209ENST00000473376 EEF2KO00418 725 aaKnown RBP13.62□□□□□ -0.23
CHD3-209ENST00000473376 INSIG1O15503 277 aa13.62□□□□□ -0.23
CHD3-209ENST00000473376 KLK10O43240 276 aa13.62□□□□□ -0.23
CHD3-209ENST00000473376 SOCS5O75159 536 aa13.62□□□□□ -0.23
CHD3-209ENST00000473376 MBD3O95983 291 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms