RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ETNK2Q9NVF9 386 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 CLCA2Q9UQC9 943 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 RIOK3O14730 519 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 AQP9O43315 295 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 BRINP1O60477 761 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 RARAP10276 462 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 SSR1P43307 286 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 BCL2L1Q07817 233 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 PTK2BQ14289 1009 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 RFTN1Q14699 578 aaPredicted RBP15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 KIF26BQ2KJY2 2108 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 DEFB133Q30KQ1 61 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 BOLA3Q53S33 107 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 CCDC122Q5T0U0 273 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 ALKBH5Q6P6C2 394 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 BRAT1Q6PJG6 821 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 TMCO3Q6UWJ1 677 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 POLNQ7Z5Q5 900 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 LZTR1Q8N653 840 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 DCBLD1Q8N8Z6 715 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 HCAR2Q8TDS4 363 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 CSPG4P5Q96PW8 444 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 UBL7Q96S82 380 aaPredicted RBP15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 DUSP23Q9BVJ7 150 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 XPO4Q9C0E2 1151 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 TCEAL2Q9H3H9 227 aaPredicted RBP15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 PRORYQ9H606 182 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 SEPT3Q9UH03 358 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 APOBEC3BQ9UH17 382 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 IP6K2Q9UHH9 426 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 ATP8A1Q9Y2Q0 1164 aa15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 GCN1Q92616 2671 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-205ENST00000472524 ARHGEF17Q96PE2 2063 aaPredicted RBP15.83■□□□□ 0.13
CCDC88B-205ENST00000472524 MUSKO15146 869 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 LZTS3O60299 673 aaPredicted RBP15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 PCCBP05166 539 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 CYP1A2P05177 515 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 CKMT1AP12532 417 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 CASP14P31944 242 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 GJC1P36383 396 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 EIF4A3P38919 411 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 MMP12P39900 470 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 CSNK1DP48730 415 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 LIG3P49916 1009 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 SCNN1BP51168 640 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 YPEL5P62699 121 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 SLC25A11Q02978 314 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 C1orf61Q13536 156 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 KRT81Q14533 505 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 ZNF235Q14590 738 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 LBRQ14739 615 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 LRRC14Q15048 493 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 WSCD2Q2TBF2 565 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 TMCO4Q5TGY1 634 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 MACC1Q6ZN28 852 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 LRRC69Q6ZNQ3 347 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 PHACTR4Q8IZ21 702 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 NIPA2Q8N8Q9 360 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 SNIP1Q8TAD8 396 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 BTN2A2Q8WVV5 523 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 PCDH18Q9HCL0 1135 aa15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 PNMA8BQ9ULN7 279 aaPredicted RBP15.83■□□□□ 0.12
CCDC88B-205ENST00000472524 LY6G6EA0A0G2JKS1 128 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 TTC24A2A3L6 582 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 RRP8O43159 456 aaKnown RBP15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 MT-CO3P00414 261 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 TPM3P06753 285 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 DUSP3P51452 185 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 RENBPP51606 427 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 CDH6P55285 790 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 E2F1Q01094 437 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 SLC10A7Q0GE19 358 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 PRRT3Q5FWE3 981 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 FAXCQ5TGI0 409 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 ZCCHC8Q6NZY4 707 aaKnown RBP15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 CACTIN-AS1Q8N1I8 211 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 ATPAF2Q8N5M1 289 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 ZNF564Q8TBZ8 553 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 TEKT4Q8WW24 435 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 NSMCE3Q96MG7 304 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 PSKH2Q96QS6 385 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 LRRC61Q9BV99 259 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 SLC13A1Q9BZW2 595 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 EVA1BQ9NVM1 165 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 SPASTQ9UBP0 616 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 PCDHB1Q9Y5F3 818 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 CSNK1G3Q9Y6M4 447 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 U3KQA8 63 aa15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 COL27A1Q8IZC6 1860 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-205ENST00000472524 MYO1FO00160 1098 aa15.81■□□□□ 0.12
CCDC88B-205ENST00000472524 C1QL1O75973 258 aa15.81■□□□□ 0.12
CCDC88B-205ENST00000472524 SERPINB6P35237 376 aa15.81■□□□□ 0.12
CCDC88B-205ENST00000472524 AP1S1P61966 158 aa15.81■□□□□ 0.12
CCDC88B-205ENST00000472524 PPARDQ03181 441 aa15.81■□□□□ 0.12
CCDC88B-205ENST00000472524 NSUN2Q08J23 767 aaKnown RBP eCLIP15.81■□□□□ 0.12
CCDC88B-205ENST00000472524 RALGDSQ12967 914 aa15.81■□□□□ 0.12
CCDC88B-205ENST00000472524 MMRN1Q13201 1228 aa15.81■□□□□ 0.12
CCDC88B-205ENST00000472524 TCEA2Q15560 299 aa15.81■□□□□ 0.12
CCDC88B-205ENST00000472524 CDKN3Q16667 212 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms