RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	POT1	Q9NUX5	634 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	ELOVL5	Q9NYP7	299 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	ABI3	Q9P2A4	366 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	SWAP70	Q9UH65	585 aa		3.98	□□□□□ -1.77
PTCD3-209	ENST00000472044	FSD2	A1L4K1	749 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	EIF3CL	B5ME19	914 aa	Known RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	MS4A18	H0YCH9	400 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	IFNL4	K9M1U5	179 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	BCAT2	O15382	392 aa	Predicted RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	LDB2	O43679	373 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	ATP2C2	O75185	946 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	TIPRL	O75663	272 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	MTA2	O94776	668 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	MMP2	P08253	660 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	ETFA	P13804	333 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	NFKBIA	P25963	317 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	SHMT1	P34896	483 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	PBX3	P40426	434 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	PLCD1	P51178	756 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	DRG2	P55039	364 aa	Known RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	NIPAL4	Q0D2K0	466 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	FGFBP1	Q14512	234 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	MEA1	Q16626	185 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	ALG11	Q2TAA5	492 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	SGO1	Q5FBB7	561 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	FAM205BP	Q63HN1	556 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	ITPRIPL1	Q6GPH6	555 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	SARM1	Q6SZW1	724 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	CYP20A1	Q6UW02	462 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	DLK2	Q6UY11	383 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	LINGO2	Q7L985	606 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	PIM3	Q86V86	326 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	ARHGAP12	Q8IWW6	846 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	RPAP2	Q8IXW5	612 aa	Predicted RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	ZCCHC9	Q8N567	271 aa	Known RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	FRMD1	Q8N878	549 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	NRAC	Q8N912	160 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	C7orf57	Q8NEG2	295 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	BEST2	Q8NFU1	509 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	PABPC5	Q96DU9	382 aa	Known RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	MMAB	Q96EY8	250 aa	Predicted RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	BARD1	Q99728	777 aa	Known RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	NUF2	Q9BZD4	464 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	CATSPERB	Q9H7T0	1116 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	PLAC1	Q9HBJ0	212 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	MAGEE1	Q9HCI5	957 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	KRCC1	Q9NPI7	259 aa	Predicted RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	EIF2B3	Q9NR50	452 aa	Known RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	SLC6A13	Q9NSD5	602 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	PLK2	Q9NYY3	685 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	DLGAP2	Q9P1A6	1054 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	IL36RN	Q9UBH0	155 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	CTNNAL1	Q9UBT7	734 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	MKLN1	Q9UL63	735 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	ADAM18	Q9Y3Q7	739 aa		3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	LSM4	Q9Y4Z0	139 aa	Known RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	SRPRB	Q9Y5M8	271 aa	Known RBP	3.97	□□□□□ -1.77
PTCD3-209	ENST00000472044	FAM237B	A0A1B0GVD1	139 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	PRSS47	A8MTI9	375 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044		I6L893	689 aa	Predicted RBP	3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	GTPBP1	O00178	669 aa	Known RBP	3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	WNT9B	O14905	357 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	SYF2	O95926	243 aa	Known RBP	3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	LCAT	P04180	440 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	TFPI	P10646	304 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	RFX2	P48378	723 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	GOLGA8DP	Q0D2H9	430 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	PRTG	Q2VWP7	1150 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	ZNF284	Q2VY69	593 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	USP41	Q3LFD5	358 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	LEXM	Q3ZCV2	418 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	LRRC8E	Q6NSJ5	796 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	CES5A	Q6NT32	575 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	IKBIP	Q70UQ0	350 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	MON1B	Q7L1V2	547 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	ZNF367	Q7RTV3	350 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	NOXA1	Q86UR1	476 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	TDRP	Q86YL5	185 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	MB21D2	Q8IYB1	491 aa	Predicted RBP	3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	TMEM199	Q8N511	208 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	PARP16	Q8N5Y8	322 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	GPT2	Q8TD30	523 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	POMGNT1	Q8WZA1	660 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	SLC41A2	Q96JW4	573 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	ZNF778	Q96MU6	729 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	FAM110A	Q9BQ89	295 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	GHITM	Q9H3K2	345 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	BPIFA1	Q9NP55	256 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	DDX4	Q9NQI0	724 aa	Known RBP	3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	SEPT11	Q9NVA2	429 aa	Known RBP	3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	NSMCE4A	Q9NXX6	385 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	TERF2IP	Q9NYB0	399 aa		3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	CORO1C	Q9ULV4	474 aa	Predicted RBP	3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	AAR2	Q9Y312	384 aa	Known RBP	3.96	□□□□□ -1.78
PTCD3-209	ENST00000472044	RSF1	Q96T23	1441 aa	Predicted RBP	3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	FAM237A	A0A1B0GTK4	181 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044		H0YGN5	161 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044		K7ENM7	598 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	SCAMP1	O15126	338 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	RGS11	O94810	467 aa		3.95	□□□□□ -1.78

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