RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 UGT1A1P22309 533 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 UGT1A4P22310 534 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 UGT1A3P35503 534 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 UGT1A5P35504 534 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 MRPS22P82650 360 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 RALGDSQ12967 914 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 PPP1R3AQ16821 1122 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 USP41Q3LFD5 358 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 CD300LGQ6UXG3 332 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 FRA10AC1Q70Z53 315 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 CDK15Q96Q40 435 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 C1orf50Q9BV19 199 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 CIPCQ9C0C6 399 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 CASS4Q9NQ75 786 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 FKBPLQ9UIM3 349 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 GGA2Q9UJY4 613 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 FGF10O15520 208 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 OR1I1O60431 355 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 SNX2O60749 519 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 MLNP12872 115 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 KCNA5P22460 613 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 DEFB103AP81534 67 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 IKBKEQ14164 716 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 LPCAT4Q643R3 524 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 ICA1LQ8NDH6 482 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 SLC22A17Q8WUG5 538 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 RTP4Q96DX8 246 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 OLFM1Q99784 485 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 DHRS4Q9BTZ2 278 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 SEMA6AQ9H2E6 1030 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 KCNK4Q9NYG8 393 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 ZNF180Q9UJW8 692 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 AURKCQ9UQB9 309 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 SLC30A1Q9Y6M5 507 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 SBF1O95248 1867 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 MTX2O75431 263 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 MFN1Q8IWA4 741 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 ANKRD49Q8WVL7 239 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 PAWRQ96IZ0 340 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 VAT1Q99536 393 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 RNF38Q9H0F5 515 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 CYLDQ9NQC7 956 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 VWA7Q9Y334 891 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 COCHO43405 550 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 SLC6A4P31645 630 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 GNA12Q03113 381 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 LSM12Q3MHD2 195 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 HECTD2Q5U5R9 776 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 PTRHD1Q6GMV3 140 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 NPAS4Q8IUM7 802 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 HS6ST3Q8IZP7 471 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 NDE1Q9NXR1 346 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 RNF112Q9ULX5 631 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 CPQQ9Y646 472 aa13.81□□□□□ -0.2
CCDC88A-211ENST00000471947 FFAR3O14843 346 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 PER2O15055 1255 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 GPR42O15529 346 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 PEX1O43933 1283 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 NIPSNAP2O75323 286 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 SEC24AO95486 1093 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 LINC00032P0C843 101 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 PLA2G4EQ3MJ16 856 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 RAB41Q5JT25 222 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 PLPP4Q5VZY2 271 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 ANKS3Q6ZW76 656 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 MRPL10Q7Z7H8 261 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 ULK2Q8IYT8 1036 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 LZTR1Q8N653 840 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 RNPEPL1Q9HAU8 725 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 AGO1Q9UL18 857 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 NUP214P35658 2090 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 NR5A2O00482 541 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 NVLO15381 856 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 MAP3K7O43318 606 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 CABYRO75952 493 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 TM4SF4P48230 202 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 AGAP9Q5VTM2 703 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 PM20D1Q6GTS8 502 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 FRMD7Q6ZUT3 714 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 BHLHA9Q7RTU4 235 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 DNAJC9Q8WXX5 260 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 NT5C3BQ969T7 300 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 NSUN5Q96P11 429 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 UBE2OQ9C0C9 1292 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 LRMDAQ9H2I8 198 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 MTG2Q9H4K7 406 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 STOML1Q9UBI4 398 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 M0QZQ0 153 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 BAIAP3O94812 1187 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 EOMESO95936 686 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 MT-ND1P03886 318 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 RPL14P50914 215 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 TCTN1Q2MV58 587 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 MILR1Q7Z6M3 343 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 RAB44Q7Z6P3 723 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 GABPB2Q8TAK5 448 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 UROC1Q96N76 676 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 SAR1AQ9NR31 198 aa13.8□□□□□ -0.2
CCDC88A-211ENST00000471947 TLR6Q9Y2C9 796 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms