RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 SPATA13Q96N96 652 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 FCRL5Q96RD9 977 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 RBM15Q96T37 977 aaKnown RBP eCLIP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 NAPGQ99747 312 aaPredicted RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 ORAI3Q9BRQ5 295 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 TMEM121Q9BTD3 319 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 MIR1-1HGQ9H1L0 117 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 EBF2Q9HAK2 575 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 PCDH12Q9NPG4 1184 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 GGT7Q9UJ14 662 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 ZFR2Q9UPR6 939 aaKnown RBP12.03□□□□□ -0.48
VPS13D-204ENST00000469054 CHKBQ9Y259 395 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 ITM2BQ9Y287 266 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 FANCMQ8IYD8 2048 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 GPR179Q6PRD1 2367 aa12.03□□□□□ -0.48
VPS13D-204ENST00000469054 MYO15AQ9UKN7 3530 aa12.02□□□□□ -0.48
VPS13D-204ENST00000469054 DMDP11532 3685 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 CTAGE9A4FU28 777 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 C5orf60A6NFR6 353 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 OPHN1O60890 802 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 MT-CYBP00156 380 aaPredicted RBP12.02□□□□□ -0.49
VPS13D-204ENST00000469054 PRLP01236 227 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 PRKCGP05129 697 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 GNSP15586 552 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 NFKBIAP25963 317 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 NUDT1P36639 197 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 RPL26P61254 145 aaKnown RBP12.02□□□□□ -0.49
VPS13D-204ENST00000469054 FAM193AP78312 1265 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 SNX1Q13596 522 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 ZNF284Q2VY69 593 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 TMEM259Q4ZIN3 620 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 PLA2G2CQ5R387 149 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 DRICH1Q6PGQ1 229 aaPredicted RBP12.02□□□□□ -0.49
VPS13D-204ENST00000469054 NDUFAF2Q8N183 169 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 C1orf216Q8TAB5 229 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 CCDC110Q8TBZ0 833 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 ACTRT1Q8TDG2 376 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 CXorf40AQ8TE69 158 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 NAP1L3Q99457 506 aaPredicted RBP12.02□□□□□ -0.49
VPS13D-204ENST00000469054 HINFPQ9BQA5 517 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 GBA3Q9H227 469 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 PCDH9Q9HC56 1237 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 VPS45Q9NRW7 570 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 HOMER3Q9NSC5 361 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 SUSD2Q9UGT4 822 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 FAM153AQ9UHL3 310 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 RSPH14Q9UHP6 348 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 RPL26L1Q9UNX3 145 aaKnown RBP12.02□□□□□ -0.49
VPS13D-204ENST00000469054 ZNF148Q9UQR1 794 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 DRG1Q9Y295 367 aaKnown RBP12.02□□□□□ -0.49
VPS13D-204ENST00000469054 PPIL1Q9Y3C6 166 aa12.02□□□□□ -0.49
VPS13D-204ENST00000469054 ATXN2Q99700 1313 aaKnown RBP12.02□□□□□ -0.49
VPS13D-204ENST00000469054 EML5Q05BV3 1969 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 SDK1Q7Z5N4 2213 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 IGLON5A6NGN9 336 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 PRR5-ARHGAP8B1AHC4 643 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 ZNF185O15231 689 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 FANCGO15287 622 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 BCAT2O15382 392 aaPredicted RBP12.01□□□□□ -0.49
VPS13D-204ENST00000469054 GFRA3O60609 400 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 MMP20O60882 483 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 LRP3O75074 770 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 PMPCBO75439 489 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 GCATO75600 419 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 ITGAVP06756 1048 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 CYP2A6P11509 494 aaPredicted RBP12.01□□□□□ -0.49
VPS13D-204ENST00000469054 PLA2G5P39877 138 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 MMP12P39900 470 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 EPHB1P54762 984 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 GDF10P55107 478 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 ETF1P62495 437 aaKnown RBP12.01□□□□□ -0.49
VPS13D-204ENST00000469054 SEMG2Q02383 582 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 CDK18Q07002 472 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 SPEM2Q0P670 501 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 RALGDSQ12967 914 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 CCDC6Q16204 474 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 DUOXA1Q1HG43 343 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 SETMARQ53H47 684 aaPredicted RBP12.01□□□□□ -0.49
VPS13D-204ENST00000469054 DPPA4Q7L190 304 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 RABEPKQ7Z6M1 372 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 DCLK2Q8N568 766 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 PRELID2Q8N945 189 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 LPCAT1Q8NF37 534 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 CEP76Q8TAP6 659 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 KLK6Q92876 244 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 RTP4Q96DX8 246 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 SCRN2Q96FV2 425 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 MCCC1Q96RQ3 725 aaPredicted RBP12.01□□□□□ -0.49
VPS13D-204ENST00000469054 C1QTNF2Q9BXJ5 285 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 ADGRE3Q9BY15 652 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 SLC17A9Q9BYT1 436 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 UBP1Q9NZI7 540 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.01□□□□□ -0.49
VPS13D-204ENST00000469054 B4GALT6Q9UBX8 382 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 DMTF1Q9Y222 760 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 SAR1BQ9Y6B6 198 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 SLCO1B1Q9Y6L6 691 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 NUMA1Q14980 2115 aa12.01□□□□□ -0.49
VPS13D-204ENST00000469054 A0A0J9YYE9 177 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 A0A1B0GTW7 788 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms