RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ANAPC5Q9UJX4 755 aa4.99□□□□□ -1.61
CCDC88A-210ENST00000468534 KLHL20Q9Y2M5 609 aa4.99□□□□□ -1.61
CCDC88A-210ENST00000468534 PLEKHM1Q9Y4G2 1056 aa4.99□□□□□ -1.61
CCDC88A-210ENST00000468534 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.99□□□□□ -1.61
CCDC88A-210ENST00000468534 A0A088AWK7 358 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 FAM234BA2RU67 622 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 A4D1N5 150 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TRIM43BA6NCK2 446 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 PTGES3LE9PB15 166 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 HNRNPDLO14979 420 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 MAPK13O15264 365 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 KCNAB3O43448 404 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 SMAD6O43541 496 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TBC1D4O60343 1298 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TNFRSF6BO95407 300 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 CLEC3BP05452 202 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TPBGLP0DKB5 382 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 ZNF3P17036 446 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TRIM21P19474 475 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 FGFR2P21802 821 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 CA8P35219 290 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 DHPSP49366 369 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 AMPHP49418 695 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 NT5C2P49902 561 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 LUMP51884 338 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 GBX2P52951 348 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 AP3M2P53677 418 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 RAB1AP62820 205 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 IRX1P78414 480 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 NKX6-1P78426 367 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TRAF1Q13077 416 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 DAZAP2Q15038 168 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TBCEQ15813 527 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 AAK1Q2M2I8 961 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 CERKLQ49MI3 558 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 CFAP221Q4G0U5 840 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 SLC39A12Q504Y0 691 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 STXBP5Q5T5C0 1151 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 GARNL3Q5VVW2 1013 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 CES4AQ5XG92 561 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 CAPRIN2Q6IMN6 1127 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 CAVIN1Q6NZI2 390 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 SLC30A9Q6PML9 568 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 PET117Q6UWS5 81 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 LRIG3Q6UXM1 1119 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 CPLX4Q7Z7G2 160 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 ADGRG6Q86SQ4 1221 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 ARMC8Q8IUR7 673 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 CCDC83Q8IWF9 413 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 SCN4BQ8IWT1 228 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TUSC5Q8IXB3 177 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 FBXW8Q8N3Y1 598 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 NIPA2Q8N8Q9 360 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TDRD5Q8NAT2 981 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TBC1D22AQ8WUA7 517 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 AFG1LQ8WV93 481 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TRIM43Q96BQ3 446 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 EID2BQ96D98 161 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 KTI12Q96EK9 354 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 MSLNLQ96KJ4 702 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 CATSPER2Q96P56 530 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 BCL7BQ9BQE9 202 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 RIOK1Q9BRS2 568 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 UQCC2Q9BRT2 126 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 MTMR12Q9C0I1 747 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 NYXQ9GZU5 481 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 ANKRD2Q9GZV1 360 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 VCX3BQ9H321 246 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 MRPL44Q9H9J2 332 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 MLXIPQ9HAP2 919 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 ZNF287Q9HBT7 754 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 SARS2Q9NP81 518 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 POLE3Q9NRF9 147 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 TM7SF3Q9NS93 570 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 IARS2Q9NSE4 1012 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 SLC35D1Q9NTN3 355 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 XPR1Q9UBH6 696 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 CPA4Q9UI42 421 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 SHOC2Q9UQ13 582 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 PSAT1Q9Y617 370 aa4.98□□□□□ -1.61
CCDC88A-210ENST00000468534 PSMD14O00487 310 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 RANBP6O60518 1105 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 VNN1O95497 513 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 RARGP13631 454 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 FPR3P25089 353 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 NFKBIAP25963 317 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 ADORA2AP29274 412 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 GRK5P34947 590 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 PSMB10P40306 273 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 NR4A2P43354 598 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 RABIFP47224 123 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 CAMLGP49069 296 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 POLGP54098 1239 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 HDAC4P56524 1084 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 MRPS5P82675 430 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 ARF5P84085 180 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 FMO1Q01740 532 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 SPAG1Q07617 926 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 DOC2AQ14183 400 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 DPYSL2Q16555 572 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms