RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 PSTKQ8IV42 348 aaKnown RBP17.66■□□□□ 0.42
COL7A1-206ENST00000466591 LZTR1Q8N653 840 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 TP53I13Q8NBR0 393 aaPredicted RBP17.66■□□□□ 0.42
COL7A1-206ENST00000466591 TSEN2Q8NCE0 465 aaKnown RBP17.66■□□□□ 0.42
COL7A1-206ENST00000466591 PDCD6IPQ8WUM4 868 aaKnown RBP17.66■□□□□ 0.42
COL7A1-206ENST00000466591 LRRC61Q9BV99 259 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 PDFQ9HBH1 243 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 AIPL1Q9NZN9 384 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 SEPT3Q9UH03 358 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 KLF15Q9UIH9 416 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 MOSPD1Q9UJG1 213 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 ANKRD11Q6UB99 2663 aaPredicted RBP17.65■□□□□ 0.42
COL7A1-206ENST00000466591 ACACAQ13085 2346 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 LMO7DNF2Z398 122 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 TLX3O43711 291 aaPredicted RBP17.65■□□□□ 0.42
COL7A1-206ENST00000466591 PRKCGP05129 697 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 GIMD1P0DJR0 217 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 TSHRP16473 764 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 ITPKBP27987 946 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 IL10RBQ08334 325 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 KRT81Q14533 505 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 INPP5AQ14642 412 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 NFATC4Q14934 902 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 SMTNL2Q2TAL5 461 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 C3orf38Q5JPI3 329 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 C6orf132Q5T0Z8 1188 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 TMCO3Q6UWJ1 677 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 RBM44Q6ZP01 1051 aaKnown RBP17.65■□□□□ 0.42
COL7A1-206ENST00000466591 ZNF248Q8NDW4 579 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 SNIP1Q8TAD8 396 aaKnown RBP17.65■□□□□ 0.42
COL7A1-206ENST00000466591 FNIP1Q8TF40 1166 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 TSACCQ96A04 125 aaPredicted RBP17.65■□□□□ 0.42
COL7A1-206ENST00000466591 TCEAL2Q9H3H9 227 aaPredicted RBP17.65■□□□□ 0.42
COL7A1-206ENST00000466591 OR1A2Q9Y585 309 aa17.65■□□□□ 0.42
COL7A1-206ENST00000466591 CHD5Q8TDI0 1954 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 A0A1B0GTH6 734 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 GOLGA6CA6NDK9 693 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 GOLGA6BA6NDN3 693 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 TNFP01375 233 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 GOLGA6DP0CG33 693 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 KELP23276 732 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 SERPINB6P35237 376 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 PRKCIP41743 596 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 HK3P52790 923 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 AP1S1P61966 158 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 SPIDRQ14159 915 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 LBRQ14739 615 aaKnown RBP17.64■□□□□ 0.41
COL7A1-206ENST00000466591 ACOX1Q15067 660 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 TMCO4Q5TGY1 634 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 ATPAF2Q8N5M1 289 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 WDR48Q8TAF3 677 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 CRELD1Q96HD1 420 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 TBATAQ96M53 351 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 WDR92Q96MX6 357 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 ZNF578Q96N58 590 aaPredicted RBP17.64■□□□□ 0.41
COL7A1-206ENST00000466591 FCRL3Q96P31 734 aaPredicted RBP17.64■□□□□ 0.41
COL7A1-206ENST00000466591 PEBP4Q96S96 227 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 APOOQ9BUR5 198 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 EDEM3Q9BZQ6 932 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 POLR1BQ9H9Y6 1135 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 THSD1Q9NS62 852 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.64■□□□□ 0.41
COL7A1-206ENST00000466591 GOLGA6AQ9NYA3 693 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 PADI4Q9UM07 663 aa17.64■□□□□ 0.41
COL7A1-206ENST00000466591 BZW2Q9Y6E2 419 aaKnown RBP17.64■□□□□ 0.41
COL7A1-206ENST00000466591 FREM2Q5SZK8 3169 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 URB1O60287 2271 aaKnown RBP17.63■□□□□ 0.41
COL7A1-206ENST00000466591 MYLKQ15746 1914 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 APC2O95996 2303 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.63■□□□□ 0.41
COL7A1-206ENST00000466591 TSPAN11A1L157 253 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 EME2A4GXA9 379 aaPredicted RBP17.63■□□□□ 0.41
COL7A1-206ENST00000466591 A8MX80 341 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 DDX3XO00571 662 aaKnown RBP eCLIP17.63■□□□□ 0.41
COL7A1-206ENST00000466591 YY2O15391 372 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 LRCH4O75427 683 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 GCATO75600 419 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 TGM2P21980 687 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 MMP12P39900 470 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 CSNK1DP48730 415 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 SRP54P61011 504 aaKnown RBP17.63■□□□□ 0.41
COL7A1-206ENST00000466591 BIRC2Q13490 618 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 ACAP1Q15027 740 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 ISXQ2M1V0 245 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 WSCD2Q2TBF2 565 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 BOLA3Q53S33 107 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 CDCP2Q5VXM1 449 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 DENND2CQ68D51 928 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 ARL10Q8N8L6 244 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 PCDH19Q8TAB3 1148 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 CPLX3Q8WVH0 158 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 NAP1L5Q96NT1 182 aaPredicted RBP17.63■□□□□ 0.41
COL7A1-206ENST00000466591 CCDC3Q9BQI4 270 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 SYT11Q9BT88 431 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 TRIM7Q9C029 511 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 CWC15Q9P013 229 aaKnown RBP17.63■□□□□ 0.41
COL7A1-206ENST00000466591 GPR34Q9UPC5 381 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 ZZEF1O43149 2961 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 DMXL2Q8TDJ6 3036 aa17.63■□□□□ 0.41
COL7A1-206ENST00000466591 CACNA1GO43497 2377 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms