RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 SDCBP2Q9H190 292 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 DMAC2Q9NW81 257 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 GALNT8Q9NY28 637 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 FAM50BQ9Y247 325 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 OTCP00480 354 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 ERCC2P18074 760 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 TSPAN8P19075 237 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 NUP62P37198 522 aaPredicted RBP19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 ZYG11AQ6WRX3 759 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 NANOGNBQ7Z5D8 188 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 C10orf53Q8N6V4 93 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 QKIQ96PU8 341 aaKnown RBP eCLIP19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 RAPGEFL1Q9UHV5 662 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 B4GALT4O60513 344 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 GSCP56915 257 aaPredicted RBP19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 CRY1Q16526 586 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 FGD3Q5JSP0 725 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 CMC1Q7Z7K0 106 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 SENP8Q96LD8 212 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 NOL11Q9H8H0 719 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 EURLQ9NYK6 297 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 KLQ9UEF7 1012 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 IKZF3Q9UKT9 509 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 IFRD1O00458 451 aaPredicted RBP19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 PAICSP22234 425 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 MTX3Q5HYI7 312 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 MAP1SQ66K74 1059 aaPredicted RBP19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 TATDN1Q6P1N9 297 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 GNPTGQ9UJJ9 305 aa19.1■□□□□ 0.65
CCDC88B-204ENST00000463837 STX11O75558 287 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 SLC22A3O75751 556 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 CNPP09543 421 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 MPSTP25325 297 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 CD86P42081 329 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 IDH2P48735 452 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 FASTKD3Q14CZ7 662 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 ERAP2Q6P179 960 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 ADAMTSL2Q86TH1 951 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 ZNF614Q8N883 585 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 CHID1Q9BWS9 393 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 UNC93B1Q9H1C4 597 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 ZBTB14O43829 449 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 LRCH4O75427 683 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 IL6P05231 212 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 CAPN1P07384 714 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 LCLAT1Q6UWP7 414 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 NACC2Q96BF6 587 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 SPEF2Q9C093 1822 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 KIF1AQ12756 1690 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 WTIPA6NIX2 430 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 PPP1R11O60927 126 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 HNRNPLP14866 589 aaKnown RBP eCLIP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 CAPZA2P47755 286 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 SLC25A52Q3SY17 297 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 USP39Q53GS9 565 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 DENND5AQ6IQ26 1287 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 PNPT1Q8TCS8 783 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 SELENOMQ8WWX9 145 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 MRPL9Q9BYD2 267 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 ATP6V1HQ9UI12 483 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 UGT2B11O75310 529 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 GCATO75600 419 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 LGALS2P05162 132 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 CLTBP09497 229 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 GSTM5P46439 218 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 USP46P62068 366 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 MRPS5P82675 430 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 PLD1Q13393 1074 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 NPY5RQ15761 445 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 ARMC12Q5T9G4 340 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 USP50Q70EL3 339 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 EIF3MQ7L2H7 374 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 VN1R5Q7Z5H4 357 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 SPATA6LQ8N4H0 392 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 PLD5Q8N7P1 536 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 ZNF317Q96PQ6 595 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 ZCCHC2Q9C0B9 1178 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 C12orf65Q9H3J6 166 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 VWA7Q9Y334 891 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 PTCH2Q9Y6C5 1203 aa19.09■□□□□ 0.65
CCDC88B-204ENST00000463837 A0A0J9YYE9 177 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 CCDC182A6NF36 153 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 DBTP11182 482 aaKnown RBP19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 GRK4P32298 578 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 HIRAP54198 1017 aaPredicted RBP19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 UGCGQ16739 394 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 LLGL2Q6P1M3 1020 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 LGI2Q8N0V4 545 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 UXS1Q8NBZ7 420 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 DNAJB3Q8WWF6 145 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 NELL1Q92832 810 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 ATP6AP2A0A1C7CYW4 349 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 DNAJA2O60884 412 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 ULK1O75385 1050 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 ATP6AP2O75787 350 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 IGSF6O95976 241 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 ZNF37AP17032 561 aaPredicted RBP19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 CHRNB2P17787 502 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 CLK2P49760 499 aaKnown RBP19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 CNTN2Q02246 1040 aa19.08■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms