RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 WDR46O15213 610 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 BIRC5O15392 142 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 NUDT21O43809 227 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 CCNT1O60563 726 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 CUTAO60888 179 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 SURF6O75683 361 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 FKBP9O95302 570 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 FTCDO95954 541 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 OTCP00480 354 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 PENKP01210 267 aaPredicted RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 CCDC166P0CW27 439 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 MYBL1P10243 752 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 RARBP10826 455 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 KRT3P12035 628 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 U2AF2P26368 475 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS41-209ENST00000457055 TKTP29401 623 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 LSP1P33241 339 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 PCGF2P35227 344 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 TAGLN2P37802 199 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 EIF2DP41214 584 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 ADCYAP1R1P41586 468 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 PIP4K2AP48426 406 aaPredicted RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 RRADP55042 308 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 NPEPPSP55786 919 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 POLE2P56282 527 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 EEF1A1P68104 462 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 PRKCEQ02156 737 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 CREMQ03060 361 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 EEF1A2Q05639 463 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 PPARAQ07869 468 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 EPS8Q12929 822 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 ZNF177Q13360 481 aaPredicted RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 FOXE3Q13461 319 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 TOP3AQ13472 1001 aaPredicted RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 GPM6BQ13491 265 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 MAMLD1Q13495 774 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 LPIN1Q14693 890 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 HERC3Q15034 1050 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 POLD3Q15054 466 aaPredicted RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 NONOQ15233 471 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS41-209ENST00000457055 CYP2A13Q16696 494 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 TTMPQ5BVD1 217 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 ZNF805Q5CZA5 627 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 TRIM61Q5EBN2 209 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 FAXCQ5TGI0 409 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 ZNF658Q5TYW1 1059 aaPredicted RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 EEF1A1P5Q5VTE0 462 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 YOD1Q5VVQ6 348 aaPredicted RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 CAVIN1Q6NZI2 390 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 ZCCHC12Q6PEW1 402 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 DEGS2Q6QHC5 323 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 SYT10Q6XYQ8 523 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 FKBP9P1Q75LS8 142 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 TRMT10CQ7L0Y3 403 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 TMCO2Q7Z6W1 182 aaPredicted RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 DDX53Q86TM3 631 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 MON1AQ86VX9 555 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 DNAAF5Q86Y56 855 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 RHPN2Q8IUC4 686 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 CDKL3Q8IVW4 592 aaPredicted RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 FUKQ8N0W3 1084 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 CADM3Q8N126 398 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 PYROXD2Q8N2H3 581 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 RTL3Q8N8U3 475 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 OR13C2Q8NGS9 318 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 SLC7A14Q8TBB6 771 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 TEX47Q8TBZ9 253 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 ZNF384Q8TF68 577 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 CCDC12Q8WUD4 166 aaPredicted RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 PDCD6IPQ8WUM4 868 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 SCFD1Q8WVM8 642 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 ASZ1Q8WWH4 475 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 BRI3BPQ8WY22 251 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 IRGQQ8WZA9 623 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 ZNF566Q969W8 418 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 TMEM68Q96MH6 324 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 USP28Q96RU2 1077 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 PKP4Q99569 1192 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 CIB1Q99828 191 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 BTBD2Q9BX70 525 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 MRPL37Q9BZE1 423 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 RHBGQ9H310 441 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 OPA3Q9H6K4 179 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 OBP2BQ9NPH6 170 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 KLHL9Q9P2J3 617 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 LARSQ9P2J5 1176 aaKnown RBP5.5□□□□□ -1.53
VPS41-209ENST00000457055 CIDEBQ9UHD4 219 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 ATP6V1HQ9UI12 483 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 OAZ3Q9UMX2 235 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 SRPK3Q9UPE1 567 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 AGAP1Q9UPQ3 857 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 ZBTB1Q9Y2K1 713 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 CLCA3PQ9Y6N3 262 aa5.5□□□□□ -1.53
VPS41-209ENST00000457055 TECPR2O15040 1411 aa5.49□□□□□ -1.53
VPS41-209ENST00000457055 LOC105371267A0A1B0GV96 52 aa5.49□□□□□ -1.53
VPS41-209ENST00000457055 hCG_1809904A0A1W2PP81 198 aa5.49□□□□□ -1.53
VPS41-209ENST00000457055 A0A1W2PPE2 198 aa5.49□□□□□ -1.53
VPS41-209ENST00000457055 A0A1W2PPW3 197 aa5.49□□□□□ -1.53
VPS41-209ENST00000457055 A0A1W2PR64 198 aa5.49□□□□□ -1.53
VPS41-209ENST00000457055 POM121BA6NF01 834 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms