RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 ABI3BPQ7Z7G0 1075 aa18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 TTC7BQ86TV6 843 aa18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 TMPRSS12Q86WS5 348 aa18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 DCP2Q8IU60 420 aaKnown RBP18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 UMODL1-AS1Q8N2C9 162 aa18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 RASGEF1CQ8N431 466 aa18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 MDM1Q8TC05 714 aa18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 DHX35Q9H5Z1 703 aaKnown RBP18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 GPATCH2LQ9NWQ4 482 aa18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 PCSK1NQ9UHG2 260 aa18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 IPO11Q9UI26 975 aaKnown RBP18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 TTC7AQ9ULT0 858 aaPredicted RBP18.21■□□□□ 0.51
SQSTM1-204ENST00000453046 PTPRBP23467 1997 aa18.21■□□□□ 0.5
SQSTM1-204ENST00000453046 TRPM6Q9BX84 2022 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 ZZEF1O43149 2961 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 PLXNB3Q9ULL4 1909 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 IGLON5A6NGN9 336 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 FPGTO14772 594 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 KRT1P04264 644 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 JUPP14923 745 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 DGKAP23743 735 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 IL1R2P27930 398 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 ABL2P42684 1182 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 ACADVLP49748 655 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 BOLA3Q53S33 107 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 ERMARDQ5T6L9 678 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 CCDC181Q5TID7 509 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 CYP4V2Q6ZWL3 525 aaPredicted RBP18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 KANSL1Q7Z3B3 1105 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 CREG2Q8IUH2 290 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 PSTKQ8IV42 348 aaKnown RBP18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 NETO2Q8NC67 525 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 ACTRT1Q8TDG2 376 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 PEBP4Q96S96 227 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 KLC2Q9H0B6 622 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 DNAJC28Q9NX36 388 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 ITM2BQ9Y287 266 aa18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 COL5A1P20908 1838 aaPredicted RBP18.2■□□□□ 0.5
SQSTM1-204ENST00000453046 CHD5Q8TDI0 1954 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 CHD6Q8TD26 2715 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 DMXL2Q8TDJ6 3036 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 POM121BA6NF01 834 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 TRABD2BA6NFA1 517 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 PGRMC1O00264 195 aaKnown RBP18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 TAF4O00268 1085 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 EEF2KO00418 725 aaKnown RBP18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 ZNF185O15231 689 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 CEP104O60308 925 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 CAPNS1P04632 268 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 XPAP23025 273 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 PTPN7P35236 360 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 CETN2P41208 172 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 COPS2P61201 443 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 DAB2P98082 770 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 FGL2Q14314 439 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 KYAT3Q6YP21 454 aaKnown RBP18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 ZNF572Q7Z3I7 529 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 VSIG1Q86XK7 387 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 SLC22A18ASQ8N1D0 253 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 SLC25A45Q8N413 288 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 PDCD7Q8N8D1 485 aaKnown RBP18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 CEP112Q8N8E3 955 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 MNS1Q8NEH6 495 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 TSC1Q92574 1164 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 CELF6Q96J87 481 aaKnown RBP18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 CAPZA3Q96KX2 299 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 BMFQ96LC9 184 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 NAP1L3Q99457 506 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 C1QTNF2Q9BXJ5 285 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 ZWILCHQ9H900 591 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 UBA2Q9UBT2 640 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 GGT7Q9UJ14 662 aa18.19■□□□□ 0.5
SQSTM1-204ENST00000453046 FREM2Q5SZK8 3169 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 RAD51BO15315 384 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 FFAR2O15552 330 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 SIGLEC6O43699 453 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 PIAS2O75928 621 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 ZRANB2O95218 330 aaKnown RBP eCLIP18.18■□□□□ 0.51e-11■■□□□ 13.3
SQSTM1-204ENST00000453046 ALPPL2P10696 532 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 PAFAH1B1P43034 410 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 RABIFP47224 123 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 NDST2P52849 883 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 HNRNPKP61978 463 aaKnown RBP eCLIP18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 ZNF211Q13398 564 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 ILKQ13418 452 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 PPP2R5EQ16537 467 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 SMTNL2Q2TAL5 461 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 ODF2Q5BJF6 829 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 ZNF542PQ5EBM4 170 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 LRRC73Q5JTD7 316 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 ZFYVE27Q5T4F4 411 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 TXNRD3NBQ6F5E7 133 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 RCOR2Q8IZ40 523 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 CXorf40AQ8TE69 158 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 IFT43Q96FT9 208 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 EXOC2Q96KP1 924 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 LENG8Q96PV6 779 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 SNRNP25Q9BV90 132 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 UCKL1Q9NWZ5 548 aa18.18■□□□□ 0.5
SQSTM1-204ENST00000453046 MFHAS1Q9Y4C4 1052 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms