RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SCOCQ9UIL1 159 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 SOX13Q9UN79 622 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 A0A1W2PQ67 120 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 AKAP10O43572 662 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 MAGEC1O60732 1142 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 FSHRP23945 695 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 PSMD8P48556 350 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 SLC25A11Q02978 314 aaKnown RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TGM3Q08188 693 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 MSLNQ13421 630 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 LAMA4Q16363 1823 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 NCBP2-AS2Q69YL0 99 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 EXOC3L1Q86VI1 746 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 SPATA6LQ8N4H0 392 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 ICA1LQ8NDH6 482 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 STYXQ8WUJ0 223 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 PTCD2Q8WV60 388 aaKnown RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 NPY6RQ99463 290 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 NEUROG2Q9H2A3 272 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 GPSM3Q9Y4H4 160 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TMEM114B3SHH9 223 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 BAIAP3O94812 1187 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 ATP5F1P24539 256 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 GPC1P35052 558 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CSKP41240 450 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 NRIP1P48552 1158 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 MLLT6P55198 1093 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CMC1Q7Z7K0 106 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 SRLQ86TD4 932 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 AASDHPPTQ9NRN7 309 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 HS3ST4Q9Y661 456 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 SKOR1P84550 965 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 ACTN3Q08043 901 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 NFYCQ13952 458 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TMEM259Q4ZIN3 620 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 MFSD4BQ5TF39 518 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 ANKS1BQ7Z6G8 1248 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 FNDC5Q8NAU1 212 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 OR10T2Q8NGX3 314 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 SLC35B2Q8TB61 432 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 MFSD3Q96ES6 412 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TBATAQ96M53 351 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TEX12Q9BXU0 123 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 MIR1-1HGQ9H1L0 117 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 AHSPQ9NZD4 102 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 COL5A3P25940 1745 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 GLYATL1P3A0A0U1RQE8 302 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 FAM237BA0A1B0GVD1 139 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 A0A1W2PPM1 405 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 ZNF839A8K0R7 811 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 USP1O94782 785 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 HTR1BP28222 390 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 HCAR3P49019 387 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 PRIM2P49643 509 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CXCR3P49682 368 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CLDN10P78369 228 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 HPCAP84074 193 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CDC16Q13042 620 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TP53BP2Q13625 1128 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 UBXN11Q5T124 520 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 ATXN7L2Q5T6C5 722 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CNSTQ6PJW8 725 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 GRASPQ7Z6J2 395 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 MRPL10Q7Z7H8 261 aaKnown RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CMTR2Q8IYT2 770 aaKnown RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TNIP2Q8NFZ5 429 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CKAP2Q8WWK9 683 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 MRPL57Q9BQC6 102 aaKnown RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 HEPHQ9BQS7 1158 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 ACE2Q9BYF1 805 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CAB39LQ9H9S4 337 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 IGSF9Q9P2J2 1179 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 MYH9P35579 1960 aaKnown RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 SEC22BO75396 215 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 DDX6P26196 483 aaKnown RBP eCLIP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CST5P28325 142 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 ERVK-21P61565 698 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 PPIDQ08752 370 aaKnown RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 WASHC5Q12768 1159 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 FAM43BQ6ZT52 329 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 IQCKQ8N0W5 287 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TMEM130Q8N3G9 435 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 SLC44A1Q8WWI5 657 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 JADE3Q92613 823 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 OTUB1Q96FW1 271 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TAGLN3Q9UI15 199 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 TCAF1Q9Y4C2 921 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 V9GYQ6 96 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 PRMT5O14744 637 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 INPPL1O15357 1258 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 RNASEH2AO75792 299 aaKnown RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 BEST1O76090 585 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CPSF4O95639 269 aaKnown RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 HSPA1AP0DMV8 641 aaKnown RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 HSPA1BP0DMV9 641 aaKnown RBP7.44□□□□□ -1.22
SYNE1-213ENST00000448038 CALB2P22676 271 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 ELP6Q0PNE2 266 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 FLOT2Q14254 428 aa7.44□□□□□ -1.22
SYNE1-213ENST00000448038 ZDHHC20Q5W0Z9 365 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms