RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 OPA1O60313 960 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 MMP12P39900 470 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 SCNN1BP51168 640 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 SLC25A11Q02978 314 aaKnown RBP20.9■□□□□ 0.94
SDC1-205ENST00000447124 RALGDSQ12967 914 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 LBRQ14739 615 aaKnown RBP20.9■□□□□ 0.94
SDC1-205ENST00000447124 RTP5Q14D33 572 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 LRRC14Q15048 493 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 NFKBIBQ15653 356 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 ZSCAN23Q3MJ62 389 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 CCDC122Q5T0U0 273 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 ALKBH5Q6P6C2 394 aaKnown RBP20.9■□□□□ 0.94
SDC1-205ENST00000447124 CPNE8Q86YQ8 564 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 PHACTR4Q8IZ21 702 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 PGBD5Q8N414 524 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 NIPA2Q8N8Q9 360 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 PSKH2Q96QS6 385 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 C1QTNF7Q9BXJ2 289 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 NRSN2Q9GZP1 204 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 CLPBQ9H078 707 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 ATP13A3Q9H7F0 1226 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.9■□□□□ 0.942e-6■■■□□ 16.2
SDC1-205ENST00000447124 ADAMTS20P59510 1910 aa20.9■□□□□ 0.94
SDC1-205ENST00000447124 TOR1BO14657 336 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 TPP1O14773 563 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 GM2AP17900 193 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 CASP14P31944 242 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 ARL4AP40617 200 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 ADKP55263 362 aaKnown RBP20.89■□□□□ 0.93
SDC1-205ENST00000447124 BCL2L1Q07817 233 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 AGERQ15109 404 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 PRRT3Q5FWE3 981 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 ERAP2Q6P179 960 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 MACC1Q6ZN28 852 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 BTN2A2Q8WVV5 523 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 TEKT4Q8WW24 435 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 XPO4Q9C0E2 1151 aaKnown RBP20.89■□□□□ 0.93
SDC1-205ENST00000447124 SPASTQ9UBP0 616 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 SEPT3Q9UH03 358 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 IP6K2Q9UHH9 426 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 SALL4Q9UJQ4 1053 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 ANAPC7Q9UJX3 599 aa20.89■□□□□ 0.93
SDC1-205ENST00000447124 TLX3O43711 291 aaPredicted RBP20.88■□□□□ 0.93
SDC1-205ENST00000447124 LZTS3O60299 673 aaPredicted RBP20.88■□□□□ 0.93
SDC1-205ENST00000447124 MAFKO60675 156 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 CELA2BP08218 269 aaPredicted RBP20.88■□□□□ 0.93
SDC1-205ENST00000447124 CR2P20023 1033 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 SERPINA4P29622 427 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 PEX5P50542 639 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 ARSEP51690 589 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 MMRN1Q13201 1228 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 INPP5AQ14642 412 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 CDKN3Q16667 212 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 COL28A1Q2UY09 1125 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 ATP13A4Q4VNC1 1196 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 FAXCQ5TGI0 409 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 TMCO4Q5TGY1 634 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 ZCCHC8Q6NZY4 707 aaKnown RBP20.88■□□□□ 0.93
SDC1-205ENST00000447124 TMCO3Q6UWJ1 677 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 LIPIQ6XZB0 460 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 PLA2G15Q8NCC3 412 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 NXPE2Q96DL1 559 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 IQCDQ96DY2 449 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 ZNF599Q96NL3 588 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 APOOQ9BUR5 198 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 LRRC61Q9BV99 259 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 USP29Q9HBJ7 922 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 APOBEC3BQ9UH17 382 aaKnown RBP20.88■□□□□ 0.93
SDC1-205ENST00000447124 AK5Q9Y6K8 562 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 NBEAQ8NFP9 2946 aa20.88■□□□□ 0.93
SDC1-205ENST00000447124 RP1P56715 2156 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 CFAP69A5D8W1 941 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 YY2O15391 372 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 GP1BAP07359 652 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 CD48P09326 243 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 TSHRP16473 764 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 HNRNPH3P31942 346 aaKnown RBP20.87■□□□□ 0.93
SDC1-205ENST00000447124 DUSP3P51452 185 aaPredicted RBP20.87■□□□□ 0.93
SDC1-205ENST00000447124 RENBPP51606 427 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 PPARDQ03181 441 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 CFAP58Q5T655 872 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 KCTD16Q68DU8 428 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 GUSBP11Q6P575 273 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 FAM71BQ8TC56 605 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 IFI44Q8TCB0 444 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 TSACCQ96A04 125 aaPredicted RBP20.87■□□□□ 0.93
SDC1-205ENST00000447124 FUBP1Q96AE4 644 aaKnown RBP20.87■□□□□ 0.93
SDC1-205ENST00000447124 IL12RB2Q99665 862 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 BOCQ9BWV1 1114 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 OR1A2Q9Y585 309 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 PCDHB1Q9Y5F3 818 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 PCDHGC4Q9Y5F7 938 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 ITPR1Q14643 2758 aa20.87■□□□□ 0.93
SDC1-205ENST00000447124 A0A087WV48 116 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 CPED1A4D0V7 1026 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 EME2A4GXA9 379 aaPredicted RBP20.86■□□□□ 0.93
SDC1-205ENST00000447124 TMEM110-MUSTN1A8MSY1 372 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 A8MX80 341 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 LMO7DNF2Z398 122 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 MYO1FO00160 1098 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms