RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 PDILTQ8N807 584 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 TMEM116Q8NCL8 245 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 GJC3Q8NFK1 279 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 NOC3LQ8WTT2 800 aaKnown RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 PSPC1Q8WXF1 523 aaKnown RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 GTF3C6Q969F1 213 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 RBM38Q9H0Z9 239 aaKnown RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 PLEKHA4Q9H4M7 779 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 KIF9Q9HAQ2 790 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 SLC6A13Q9NSD5 602 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 HAUS2Q9NVX0 235 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 CNOT8Q9UFF9 292 aaKnown RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 TBC1D29Q9UFV1 150 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.66□□□□□ -1.82
VPS41-207ENST00000439468 SCINQ9Y6U3 715 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 BTBD18B2RXH4 712 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 I6L893 689 aaPredicted RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 AP3D1O14617 1153 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 BCAT2O15382 392 aaPredicted RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 KLK8O60259 260 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 RGS11O94810 467 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 TFP02787 698 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 ACADMP11310 421 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 CHRNB2P17787 502 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 SHMT1P34896 483 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 ARL3P36405 182 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 AVPR1AP37288 418 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 THPOP40225 353 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 PIP4K2AP48426 406 aaPredicted RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 PMS2P54278 862 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 ARF3P61204 181 aaPredicted RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 ARF1P84077 181 aaKnown RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 TRAF1Q13077 416 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 LPIN1Q14693 890 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 MEA1Q16626 185 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 KLHL22Q53GT1 634 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 ESCO2Q56NI9 601 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 WASHC2DQ5SRD0 308 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 TSSK4Q6SA08 328 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 C16orf54Q6UWD8 224 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 CRELD2Q6UXH1 353 aaPredicted RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 CLEC17AQ6ZS10 378 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 MEPCEQ7L2J0 689 aaKnown RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 FASTKD5Q7L8L6 764 aaKnown RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 HAPLN4Q86UW8 402 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 CCDC13Q8IYE1 715 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 PELI3Q8N2H9 469 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 ZCCHC9Q8N567 271 aaKnown RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 TTC39CQ8N584 583 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 FRMD1Q8N878 549 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 MCPH1Q8NEM0 835 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 ZKSCAN4Q969J2 545 aaPredicted RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 RNF183Q96D59 192 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 MMABQ96EY8 250 aaPredicted RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 ZC3HAV1LQ96H79 300 aaKnown RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 SIN3AQ96ST3 1273 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 MXRA8Q9BRK3 442 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 DDX4Q9NQI0 724 aaKnown RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 DIAPH3Q9NSV4 1193 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 NCKIPSDQ9NZQ3 722 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 NDRG3Q9UGV2 375 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 LIMA1Q9UHB6 759 aaKnown RBP3.65□□□□□ -1.83
VPS41-207ENST00000439468 SLCO3A1Q9UIG8 710 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 GPR34Q9UPC5 381 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 FAM96BQ9Y3D0 163 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 SLC4A4Q9Y6R1 1079 aa3.65□□□□□ -1.83
VPS41-207ENST00000439468 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.64□□□□□ -1.83
VPS41-207ENST00000439468 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.64□□□□□ -1.83
VPS41-207ENST00000439468 ANKRD18BA2A2Z9 1011 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 C17orf102A2RUQ5 167 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 LRRC53A6NM62 1247 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 EIF3CLB5ME19 914 aaKnown RBP3.64□□□□□ -1.83
VPS41-207ENST00000439468 PTGES3LE9PB15 166 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 EBAG9O00559 213 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 SEC14L5O43304 696 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 SMAD6O43541 496 aaKnown RBP3.64□□□□□ -1.83
VPS41-207ENST00000439468 AHCYL1O43865 530 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 HNRNPCL1O60812 293 aaKnown RBP3.64□□□□□ -1.83
VPS41-207ENST00000439468 PAGE4O60829 102 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 SEC14L2O76054 403 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 EIF2S1P05198 315 aaKnown RBP3.64□□□□□ -1.83
VPS41-207ENST00000439468 TFPIP10646 304 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 ZNF8P17098 575 aaPredicted RBP3.64□□□□□ -1.83
VPS41-207ENST00000439468 PTPN2P17706 415 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 DCTDP32321 178 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 HOXD13P35453 343 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 BSGP35613 385 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 CDH12P55289 794 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 MAMLD1Q13495 774 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 ARHGEF6Q15052 776 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 C2orf68Q2NKX9 166 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 SGO1Q5FBB7 561 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 HEPHL1Q6MZM0 1159 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 KLHL24Q6TFL4 600 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 LCTLQ6UWM7 567 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 CCDC129Q6ZRS4 1044 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 TMC8Q8IU68 726 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 SLC35F3Q8IY50 421 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 PARP16Q8N5Y8 322 aa3.64□□□□□ -1.83
VPS41-207ENST00000439468 ZMIZ2Q8NF64 920 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms