RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 WNT3AP56704 352 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 R3HCC1LQ7Z5L2 792 aaKnown RBP17.26■□□□□ 0.35
PTPRF-209ENST00000438120 C15orf41Q9Y2V0 281 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.26■□□□□ 0.35
PTPRF-209ENST00000438120 HIST1H2ABP04908 130 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 CXCR2P25025 360 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 PPIDQ08752 370 aaKnown RBP17.26■□□□□ 0.35
PTPRF-209ENST00000438120 SNAP47Q5SQN1 464 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 HIST3H2AQ7L7L0 130 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 NKX2-3Q8TAU0 364 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 HIST1H2ACQ93077 130 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 C19orf60Q96EN9 201 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 VPS35Q96QK1 796 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 ZNF184Q99676 751 aaPredicted RBP17.26■□□□□ 0.35
PTPRF-209ENST00000438120 MRIQ9BWK5 157 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 FBXO5Q9UKT4 447 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 IQGAP1P46940 1657 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 TCRBV9S1A1TA0A576 114 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 OTOP3Q7RTS5 596 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 RASAL3Q86YV0 1011 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 ATAD1Q8NBU5 361 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 UBE2E3Q969T4 207 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 CFAP97Q9P2B7 532 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 PLSCR1O15162 318 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 MAGEC1O60732 1142 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 FKTNO75072 461 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 RECQL5O94762 991 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-209ENST00000438120 USP4Q13107 963 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 C15orf52Q6ZUT6 534 aaKnown RBP17.25■□□□□ 0.35
PTPRF-209ENST00000438120 KBTBD2Q8IY47 623 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 ENKURQ8TC29 256 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 FAIM2Q9BWQ8 316 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 PCDH18Q9HCL0 1135 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 CIDEBQ9UHD4 219 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 KIF20BQ96Q89 1820 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 ADGRB1O14514 1584 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 FGRP09769 529 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 TAF10Q12962 218 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 ZNF549Q6P9A3 640 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 DSELQ8IZU8 1212 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 RNASE11Q8TAA1 199 aaKnown RBP17.25■□□□□ 0.35
PTPRF-209ENST00000438120 RERGQ96A58 199 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-209ENST00000438120 S100A13Q99584 98 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 EXO5Q9H790 373 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 PNPOQ9NVS9 261 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 LEF1Q9UJU2 399 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-209ENST00000438120 PTCH2Q9Y6C5 1203 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 COL3A1P02461 1466 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-209ENST00000438120 KLHL18O94889 574 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 ELFN1P0C7U0 828 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 WASP42768 502 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 MAPK8P45983 427 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 NRG1Q02297 640 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-209ENST00000438120 SPDYCQ5MJ68 293 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 ALKBH2Q6NS38 261 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 APLFQ8IW19 511 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-209ENST00000438120 KLHL23Q8NBE8 558 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 MFSD14AQ96MC6 490 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 BCL2L14Q9BZR8 327 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 TRIM8Q9BZR9 551 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 AGLP35573 1532 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 PPP1R11O60927 126 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-209ENST00000438120 MMP3P08254 477 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 RPL4P36578 427 aaKnown RBP17.25■□□□□ 0.35
PTPRF-209ENST00000438120 DGUOKQ16854 277 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 INTS11Q5TA45 600 aaKnown RBP17.25■□□□□ 0.35
PTPRF-209ENST00000438120 TOP6BLQ8N6T0 577 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 RCN3Q96D15 328 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 VAV3Q9UKW4 847 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 NR2E3Q9Y5X4 410 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 TMEM191CA6NGB0 347 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 CCNIQ14094 377 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 DUPD1Q68J44 220 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 AGMOQ6ZNB7 445 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 MOSPD2Q8NHP6 518 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 CLHC1Q8NHS4 586 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 KLRG1Q96E93 195 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 PPP3R2Q96LZ3 170 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 PANX1Q96RD7 426 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 SPAG4Q9NPE6 437 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 EGFL7Q9UHF1 273 aa17.25■□□□□ 0.35
PTPRF-209ENST00000438120 NPEPPSL1A6NEC2 478 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 PPTC7Q8NI37 304 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 KREMEN1Q96MU8 473 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 GPR20Q99678 358 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 IMP3Q9NV31 184 aaKnown RBP17.24■□□□□ 0.35
PTPRF-209ENST00000438120 SESN1Q9Y6P5 492 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 KPNA5O15131 536 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 CCL16O15467 120 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 CCNE2O96020 404 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 SLC35G4P0C7Q5 338 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 USP46P62068 366 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 KCNJ2P63252 427 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 PTPN20Q4JDL3 420 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 ALG3Q92685 438 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 POLR3HQ9Y535 204 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-209ENST00000438120 ITGA7Q13683 1181 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 AMIGO2Q86SJ2 522 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 FBXW8Q8N3Y1 598 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 NELL1Q92832 810 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms