RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 KCNU1A8MYU2 1149 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 GOLGA8TH3BQL2 631 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 ALOX15BO15296 676 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 LHX8Q68G74 356 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 MRPL43Q8N983 215 aaKnown RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 TFAP2BQ92481 460 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 CDCA3Q99618 268 aaPredicted RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 MMADHCQ9H3L0 296 aaPredicted RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 APOBEC3GQ9HC16 384 aaKnown RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 IMP3Q9NV31 184 aaKnown RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 PNMA8BQ9ULN7 279 aaPredicted RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 FCF1Q9Y324 198 aaKnown RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 SPACA6W5XKT8 324 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 CASP8AP2Q9UKL3 1982 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 GSAPA4D1B5 854 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 MBLAC1A4D2B0 266 aaPredicted RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 TMEM191CA6NGB0 347 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 C2orf71A6NGG8 1288 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 SEC24DO94855 1032 aaPredicted RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 ERBB2P04626 1255 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 OR56A5P0C7T3 313 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 ALPPL2P10696 532 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 TCN1P20061 433 aaPredicted RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 PTPN7P35236 360 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 GLRBP48167 497 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 ZNF135P52742 658 aaPredicted RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 SPDYE7PQ495Y7 208 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 MON1BQ7L1V2 547 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 OSTM1Q86WC4 334 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 SLC39A11Q8N1S5 342 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 MED8Q96G25 268 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 UNKQ9C0B0 810 aaKnown RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 LMAN2LQ9H0V9 348 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 DENND2DQ9H6A0 471 aaPredicted RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 IARS2Q9NSE4 1012 aaKnown RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 NKX1-2Q9UD57 310 aaPredicted RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 HMGXB4Q9UGU5 601 aa10.71□□□□□ -0.69
TCOF1-204ENST00000427724 DRG1Q9Y295 367 aaKnown RBP10.71□□□□□ -0.69
TCOF1-204ENST00000427724 SDR42E2A6NKP2 422 aa10.71□□□□□ -0.7
TCOF1-204ENST00000427724 APOC4-APOC2K7ER74 178 aa10.71□□□□□ -0.7
TCOF1-204ENST00000427724 ATP6V1G1O75348 118 aa10.71□□□□□ -0.7
TCOF1-204ENST00000427724 APOC2P02655 101 aa10.71□□□□□ -0.7
TCOF1-204ENST00000427724 MMP8P22894 467 aa10.71□□□□□ -0.7
TCOF1-204ENST00000427724 ARRB1P49407 418 aaPredicted RBP10.71□□□□□ -0.7
TCOF1-204ENST00000427724 ADARP55265 1226 aaKnown RBP10.71□□□□□ -0.7
TCOF1-204ENST00000427724 WDR4P57081 412 aaKnown RBP10.71□□□□□ -0.7
TCOF1-204ENST00000427724 CDK16Q00536 496 aa10.71□□□□□ -0.7
TCOF1-204ENST00000427724 POU5F1Q01860 360 aaKnown RBP10.71□□□□□ -0.7
TCOF1-204ENST00000427724 GNA12Q03113 381 aa10.71□□□□□ -0.7
TCOF1-204ENST00000427724 TRIP4Q15650 581 aaPredicted RBP10.71□□□□□ -0.7
TCOF1-204ENST00000427724 AMZ1Q400G9 498 aa10.71□□□□□ -0.7
TCOF1-204ENST00000427724 SERAC1Q96JX3 654 aa10.71□□□□□ -0.7
TCOF1-204ENST00000427724 DNAJC28Q9NX36 388 aa10.71□□□□□ -0.7
TCOF1-204ENST00000427724 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.7□□□□□ -0.7
TCOF1-204ENST00000427724 ISM1B1AKI9 464 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 LEFTY2O00292 366 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 KIAA0355O15063 1070 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 CDK14O94921 469 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 VAPBO95292 243 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 KLF8O95600 359 aaPredicted RBP10.7□□□□□ -0.7
TCOF1-204ENST00000427724 GUCA1CO95843 209 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 DDX6P26196 483 aaKnown RBP eCLIP10.7□□□□□ -0.7
TCOF1-204ENST00000427724 COPAP53621 1224 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 IL1RL1Q01638 556 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 CDH17Q12864 832 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 UPP1Q16831 310 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 ADGRF1Q5T601 910 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 CDCA2Q69YH5 1023 aaPredicted RBP10.7□□□□□ -0.7
TCOF1-204ENST00000427724 PLEKHA7Q6IQ23 1121 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 C16orf46Q6P387 395 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 CLEC20AQ6ZU45 233 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 SIX5Q8N196 739 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 LMO3Q8TAP4 145 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 ATOH1Q92858 354 aaPredicted RBP10.7□□□□□ -0.7
TCOF1-204ENST00000427724 CCT7Q99832 543 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 HEPHQ9BQS7 1158 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 FRMD8P1Q9BZ68 369 aaPredicted RBP10.7□□□□□ -0.7
TCOF1-204ENST00000427724 UPF3AQ9H1J1 476 aaKnown RBP10.7□□□□□ -0.7
TCOF1-204ENST00000427724 LRRC40Q9H9A6 602 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 GOLGA8QA0A0J9YX86 632 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 GOLGA8OA6NCC3 632 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 GOLGA8NF8WBI6 632 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 KLHL2O95198 593 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 PCCBP05166 539 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 HOXA11P31270 313 aaPredicted RBP10.7□□□□□ -0.7
TCOF1-204ENST00000427724 CRADDP78560 199 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 RFWD2Q8NHY2 731 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 MECRQ9BV79 373 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 LMAN1LQ9HAT1 526 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 PAK6Q9NQU5 681 aaPredicted RBP10.7□□□□□ -0.7
TCOF1-204ENST00000427724 SAR1AQ9NR31 198 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 TMPRSS4Q9NRS4 437 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 CYP8B1Q9UNU6 501 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 DTNAQ9Y4J8 743 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 HIDE1A8MVS5 230 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 E9PAM4 449 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 ITGAVP06756 1048 aa10.7□□□□□ -0.7
TCOF1-204ENST00000427724 UNGP13051 313 aaPredicted RBP10.7□□□□□ -0.7
TCOF1-204ENST00000427724 EEF1DP29692 281 aaKnown RBP10.7□□□□□ -0.7
TCOF1-204ENST00000427724 ABCG1P45844 678 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms