RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	FEM1C	Q96JP0	617 aa		13.25	□□□□□ -0.29
SF1-206	ENST00000413725	GPR174	Q9BXC1	333 aa		13.25	□□□□□ -0.29
SF1-206	ENST00000413725	FSD1L	Q9BXM9	530 aa		13.25	□□□□□ -0.29
SF1-206	ENST00000413725	DDX47	Q9H0S4	455 aa	Known RBP	13.25	□□□□□ -0.29
SF1-206	ENST00000413725	PREB	Q9HCU5	417 aa		13.25	□□□□□ -0.29
SF1-206	ENST00000413725	UBP1	Q9NZI7	540 aa		13.25	□□□□□ -0.29
SF1-206	ENST00000413725	MBD1	Q9UIS9	605 aa	Predicted RBP	13.25	□□□□□ -0.29
SF1-206	ENST00000413725	KNL1	Q8NG31	2342 aa		13.25	□□□□□ -0.29
SF1-206	ENST00000413725	TBC1D3D	A0A087WVF3	549 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	TBC1D3I	A0A087WXS9	549 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	TBC1D3E	A0A087X179	549 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	TBC1D3K	A0A087X1G2	549 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	TBC1D3F	A6NER0	549 aa	Predicted RBP	13.24	□□□□□ -0.29
SF1-206	ENST00000413725	PRR23A	A6NEV1	266 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	ESPN	B1AK53	854 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	TBC1D3L	B9A6J9	549 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	PSMD3	O43242	534 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	HR	O43593	1189 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	TSPAN6	O43657	245 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	FZD6	O60353	706 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	RHOBTB1	O94844	696 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	PCDH8	O95206	1070 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	ECEL1	O95672	775 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	NDST3	O95803	873 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	TBC1D3H	P0C7X1	549 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	CYP2A6	P11509	494 aa	Predicted RBP	13.24	□□□□□ -0.29
SF1-206	ENST00000413725	ETS1	P14921	441 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	BCKDHB	P21953	392 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	ABL2	P42684	1182 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	GRIA4	P48058	902 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	WNT3A	P56704	352 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	CDK18	Q07002	472 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	SIM2	Q14190	667 aa	Predicted RBP	13.24	□□□□□ -0.29
SF1-206	ENST00000413725	IHH	Q14623	411 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	PPP1R7	Q15435	360 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	LRRC73	Q5JTD7	316 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	TBC1D3G	Q6DHY5	549 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	TBC1D3C	Q6IPX1	549 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	NEK5	Q6P3R8	708 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	KDELC1	Q6UW63	502 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	USP45	Q70EL2	814 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	ZSWIM9	Q86XI8	627 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	KLHL7	Q8IXQ5	586 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	TBC1D3	Q8IZP1	549 aa	Predicted RBP	13.24	□□□□□ -0.29
SF1-206	ENST00000413725	LPCAT1	Q8NF37	534 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	IPMK	Q8NFU5	416 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	CADM4	Q8NFZ8	388 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	ATOH1	Q92858	354 aa	Predicted RBP	13.24	□□□□□ -0.29
SF1-206	ENST00000413725	RMDN1	Q96DB5	314 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	OXNAD1	Q96HP4	312 aa	Predicted RBP	13.24	□□□□□ -0.29
SF1-206	ENST00000413725	PCDH12	Q9NPG4	1184 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	PCYOX1	Q9UHG3	505 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	RAB23	Q9ULC3	237 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	TPX2	Q9ULW0	747 aa	Known RBP	13.24	□□□□□ -0.29
SF1-206	ENST00000413725	FADS3	Q9Y5Q0	445 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725		R4GN57	208 aa		13.24	□□□□□ -0.29
SF1-206	ENST00000413725	VPS13A	Q96RL7	3174 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	ERI2	A8K979	691 aa	Known RBP	13.23	□□□□□ -0.29
SF1-206	ENST00000413725		E7EVH7	732 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	RIOK3	O14730	519 aa	Known RBP	13.23	□□□□□ -0.29
SF1-206	ENST00000413725	AREL1	O15033	823 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	ZNF500	O60304	480 aa	Predicted RBP	13.23	□□□□□ -0.29
SF1-206	ENST00000413725	METTL18	O95568	372 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	EPO	P01588	193 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	KRT14	P02533	472 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	PDHA1	P08559	390 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	ZSCAN5DP	P0CG00	497 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	RPL22	P35268	128 aa	Known RBP	13.23	□□□□□ -0.29
SF1-206	ENST00000413725	LMAN1	P49257	510 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	TAS2R38	P59533	333 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	FAM193A	P78312	1265 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	SPDYC	Q5MJ68	293 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	FAXC	Q5TGI0	409 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	PMS2CL	Q68D20	193 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	KIAA0895L	Q68EN5	471 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	KIAA1161	Q6NSJ0	714 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	PRR23B	Q6ZRT6	265 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	KDELC2	Q7Z4H8	507 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	GLIS1	Q8NBF1	620 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	SPATA4	Q8NEY3	305 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	CCHCR1	Q8TD31	782 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	CXorf40A	Q8TE69	158 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	PIH1D2	Q8WWB5	315 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	FOXJ1	Q92949	421 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	SLCO2A1	Q92959	643 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	MRGPRX2	Q96LB1	330 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	MLPH	Q9BV36	600 aa	Predicted RBP	13.23	□□□□□ -0.29
SF1-206	ENST00000413725	DUSP15	Q9H1R2	295 aa	Predicted RBP	13.23	□□□□□ -0.29
SF1-206	ENST00000413725	RAB6B	Q9NRW1	208 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	MRFAP1	Q9Y605	127 aa		13.23	□□□□□ -0.29
SF1-206	ENST00000413725	ZNF106	Q9H2Y7	1883 aa	Known RBP	13.23	□□□□□ -0.29
SF1-206	ENST00000413725	TDRD6	O60522	2096 aa	Known RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725		A0A0J9YYE9	177 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	CAPN8	A6NHC0	703 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	MEI4	A8MW99	385 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	ANKRD66	B4E2M5	251 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	RNGTT	O60942	597 aa	Known RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	FSBP	O95073	299 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	PRL	P01236	227 aa		13.22	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms