RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 GYPCP04921 128 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 KCNK18Q7Z418 384 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 METTL16Q86W50 562 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 UCKL1Q9NWZ5 548 aa13.4□□□□□ -0.26
CCDC88A-204ENST00000413716 QSOX1O00391 747 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 SSX5O60225 188 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 SH3BGRLO75368 114 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 PGAM2P15259 253 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 SLC9A3P48764 834 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 TOB2Q14106 344 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 ARSJQ5FYB0 599 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 MSL3Q8N5Y2 521 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 SELENOMQ8WWX9 145 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 ZKSCAN4Q969J2 545 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 TMEM169Q96HH4 297 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 COLEC11Q9BWP8 271 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 PIH1D3Q9NQM4 214 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 NMT2O60551 498 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 MYBP10242 640 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 TTMPQ5BVD1 217 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 PCID2Q5JVF3 399 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 MIPEPQ99797 713 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 NAALADL1Q9UQQ1 740 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 MAPKBP1O60336 1514 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 KAT7O95251 611 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 IDO1P14902 403 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 CTSKP43235 329 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 CEP76Q8TAP6 659 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 APOL2Q9BQE5 337 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF700Q9H0M5 742 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 CDH19Q9H159 772 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF335Q9H4Z2 1342 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 KIAA0556O60303 1618 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 GH1P01241 217 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 INTS6LQ5JSJ4 861 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 SDR16C5Q8N3Y7 309 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 OR52K1Q8NGK4 314 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 KIAA1683Q9H0B3 1180 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 URB1O60287 2271 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 CBX6O95503 412 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 CD2P06729 351 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 ARCN1P48444 511 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 TMBIM6P55061 237 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 ADNP2Q6IQ32 1131 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 LIN37Q96GY3 246 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 ZFYVE28Q9HCC9 887 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 LOC102724428A0A0B4J2F2 783 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 DDX3XO00571 662 aaKnown RBP eCLIP13.39□□□□□ -0.271e-13■■■■□ 20.8
CCDC88A-204ENST00000413716 FTH1P02794 183 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 NTRK1P04629 796 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 CYP2C9P11712 490 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF12P17014 697 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 KLK7P49862 253 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 SIK1P57059 783 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 PPP1R16AQ96I34 528 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 RC3H2Q9HBD1 1191 aaKnown RBP13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 PITPNM1O00562 1244 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 BCKDKO14874 412 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 SP140Q13342 867 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 BEND5Q7L4P6 421 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 PADI2Q9Y2J8 665 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 MARC1Q5VT66 337 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 CD300LFQ8TDQ1 290 aa13.39□□□□□ -0.27
CCDC88A-204ENST00000413716 M0R129 80 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 MATN2O00339 956 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 LARGE1O95461 756 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 CSF1RP07333 972 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 PET100P0DJ07 73 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 QRICH1Q2TAL8 776 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF518BQ9C0D4 1074 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 MAN2B2Q9Y2E5 1009 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 A0A096LPK6 155 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 MAP3K6O95382 1288 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 SLC16A8O95907 504 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 SCGB1D2O95969 90 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 C6orf222P0C671 652 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 CDH5P33151 784 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 PRKCDQ05655 676 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 LHFPL3Q86UP9 236 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 ELMO1Q92556 727 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 TRIM36Q9NQ86 728 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 PEX16Q9Y5Y5 336 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 ANPEPP15144 967 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 EFCAB12Q6NXP0 572 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 CRELD2Q6UXH1 353 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 TMEM192Q8IY95 271 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF709Q8N972 641 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 RIT2Q99578 217 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.38□□□□□ -0.271e-7■■■□□ 16
CCDC88A-204ENST00000413716 MYH7BA7E2Y1 1941 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 DDX3YO15523 660 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 TCF12Q99081 682 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 ANTXR1Q9H6X2 564 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 CDHR5Q9HBB8 845 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 RFX7Q2KHR2 1363 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 SRRM3A6NNA2 597 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 TFPIP10646 304 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 CTSEP14091 401 aa13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 HOXB8P17481 243 aaPredicted RBP13.38□□□□□ -0.27
CCDC88A-204ENST00000413716 MCAMP43121 646 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms