RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 NDUFAF4Q9P032 175 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 POLR1DQ9Y2S0 133 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 PP2D1A8MPX8 630 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 H7C1W4 665 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 CHST15Q7LFX5 561 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-206ENST00000409809 AMIGO2Q86SJ2 522 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 GPSM1Q86YR5 675 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 NACC2Q96BF6 587 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 C12orf43Q96C57 262 aaKnown RBP12.95□□□□□ -0.34
COL6A3-206ENST00000409809 POLR3BQ9NW08 1133 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-206ENST00000409809 SLC28A1O00337 649 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 QSOX1O00391 747 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 DFNA5O60443 496 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 SLC6A2P23975 617 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 HNRNPH3P31942 346 aaKnown RBP12.95□□□□□ -0.34
COL6A3-206ENST00000409809 SLC11A2P49281 568 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 SEPHS1P49903 392 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 HUNKP57058 714 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 SLC25A3Q00325 362 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 ADGRE1Q14246 886 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 QRICH1Q2TAL8 776 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 TDRPQ86YL5 185 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 PHC2Q8IXK0 858 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 CFAP206Q8IYR0 622 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 A0A1B0GVC2 190 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 CPSF4O95639 269 aaKnown RBP12.95□□□□□ -0.34
COL6A3-206ENST00000409809 DYNLL1P63167 89 aaKnown RBP12.95□□□□□ -0.34
COL6A3-206ENST00000409809 EMC2Q15006 297 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 VN1R5Q7Z5H4 357 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 ADAMTSL2Q86TH1 951 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 GALNT12Q8IXK2 581 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 SERAC1Q96JX3 654 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 COPZ2Q9P299 210 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 SAE1Q9UBE0 346 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-206ENST00000409809 ERBB3P21860 1342 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF432O94892 652 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 RPS2P15880 293 aaKnown RBP12.95□□□□□ -0.34
COL6A3-206ENST00000409809 ITGA3P26006 1051 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 TMBIM6P55061 237 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 IL27RAQ6UWB1 636 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 MBOAT7Q96N66 472 aa12.95□□□□□ -0.34
COL6A3-206ENST00000409809 SLC22A3O75751 556 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 PABPC1LQ4VXU2 614 aaKnown RBP12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ALDH16A1Q8IZ83 802 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ASB15Q8WXK1 588 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ERVK-11Q9UQG0 969 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ZW10O43264 779 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 OTCP00480 354 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 HOXC6P09630 235 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 CDC25CP30307 473 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 RTP1P59025 263 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 NOTUMQ6P988 496 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 MCOLN2Q8IZK6 566 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ABRAQ8N0Z2 381 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 CYP4F12Q9HCS2 524 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 NMRK2Q9NPI5 230 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 PCDHGB1Q9Y5G3 927 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 FGF10O15520 208 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-206ENST00000409809 NRP2O60462 931 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 PRH1P02810 166 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 BST1Q10588 318 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 BRMS1LQ5PSV4 323 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 TMEM192Q8IY95 271 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 POMGNT2Q8NAT1 580 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 TRIT1Q9H3H1 467 aaKnown RBP12.94□□□□□ -0.34
COL6A3-206ENST00000409809 GULP1Q9UBP9 304 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF99A8MXY4 864 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-206ENST00000409809 GMFGO60234 142 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 KDM4BO94953 1096 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ODC1P11926 461 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 CYP2F1P24903 491 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 PON3Q15166 354 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 TCEA2Q15560 299 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF621Q6ZSS3 439 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 OR52K2Q8NGK3 314 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 FAM237BA0A1B0GVD1 139 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 WRBO00258 174 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ADAM15Q13444 863 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 IER5Q5VY09 327 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 USP7Q93009 1102 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 UNC93B1Q9H1C4 597 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 C14orf105Q9NVL8 296 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 RBMX2Q9Y388 322 aaKnown RBP12.94□□□□□ -0.34
COL6A3-206ENST00000409809 REXO2Q9Y3B8 237 aaKnown RBP12.94□□□□□ -0.34
COL6A3-206ENST00000409809 TNS3Q68CZ2 1445 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 NRXN1Q9ULB1 1477 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 TSTD3H0UI37 97 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 TGM6O95932 706 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 MOCS2O96007 188 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-206ENST00000409809 ARL4DP49703 201 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 DUPD1Q68J44 220 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 SLC25A25Q6KCM7 469 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 RIOX2Q8IUF8 465 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 MAN1C1Q9NR34 630 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 EIF3KQ9UBQ5 218 aaKnown RBP12.94□□□□□ -0.34
COL6A3-206ENST00000409809 AGAP1Q9UPQ3 857 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 SH3PXD2BA1X283 911 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 FBP2O00757 339 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 UGT2B17O75795 530 aa12.94□□□□□ -0.34
COL6A3-206ENST00000409809 PSKH1P11801 424 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms