RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 RHOCP08134 193 aa20.23■□□□□ 0.83
USP39-204ENST00000409766 IRF1P10914 325 aa20.23■□□□□ 0.83
USP39-204ENST00000409766 PPP3CCP48454 512 aa20.23■□□□□ 0.83
USP39-204ENST00000409766 KDSRQ06136 332 aa20.23■□□□□ 0.83
USP39-204ENST00000409766 ZNF177Q13360 481 aaPredicted RBP20.23■□□□□ 0.83
USP39-204ENST00000409766 VEPH1Q14D04 833 aa20.23■□□□□ 0.83
USP39-204ENST00000409766 WLSQ5T9L3 541 aa20.23■□□□□ 0.83
USP39-204ENST00000409766 FBXO27Q8NI29 283 aa20.23■□□□□ 0.83
USP39-204ENST00000409766 TBATAQ96M53 351 aa20.23■□□□□ 0.83
USP39-204ENST00000409766 CINPQ9BW66 212 aaPredicted RBP20.23■□□□□ 0.83
USP39-204ENST00000409766 ACSS2Q9NR19 701 aa20.23■□□□□ 0.83
USP39-204ENST00000409766 TMEM39AQ9NV64 488 aa20.23■□□□□ 0.83
USP39-204ENST00000409766 OR51F1A6NGY5 319 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 PEX11AO75192 247 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 NDST3O95803 873 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 CR2P20023 1033 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 RGRP47804 291 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 KPNA2P52292 529 aaKnown RBP20.22■□□□□ 0.83
USP39-204ENST00000409766 TWF1Q12792 350 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 RFTN1Q14699 578 aaPredicted RBP20.22■□□□□ 0.83
USP39-204ENST00000409766 ARL13AQ5H913 290 aaPredicted RBP20.22■□□□□ 0.83
USP39-204ENST00000409766 HECTD2Q5U5R9 776 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 FAM117BQ6P1L5 589 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 DNAJB7Q7Z6W7 309 aaPredicted RBP20.22■□□□□ 0.83
USP39-204ENST00000409766 TMEM150AQ86TG1 271 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 LDB1Q86U70 411 aaPredicted RBP20.22■□□□□ 0.83
USP39-204ENST00000409766 RBM15BQ8NDT2 890 aaKnown RBP20.22■□□□□ 0.83
USP39-204ENST00000409766 MAPK15Q8TD08 544 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 MCUR1Q96AQ8 359 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 UNKQ9C0B0 810 aaKnown RBP20.22■□□□□ 0.83
USP39-204ENST00000409766 SUDS3Q9H7L9 328 aaPredicted RBP20.22■□□□□ 0.83
USP39-204ENST00000409766 ATP11BQ9Y2G3 1177 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 VWA7Q9Y334 891 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 PLXNA4Q9HCM2 1894 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 ABHD14A-ACY1A0A1B0GW23 586 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 SPECC1L-ADORA2AF8WAN1 911 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 TSPAN3O60637 253 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 RFC2P35250 354 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 CCR10P46092 362 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 DEFB103AP81534 67 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 CSHL1Q14406 222 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 CFAP157Q5JU67 520 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 DIS3LQ8TF46 1054 aaKnown RBP20.22■□□□□ 0.83
USP39-204ENST00000409766 TSPAN17Q96FV3 270 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 DNAJC1Q96KC8 554 aaKnown RBP20.22■□□□□ 0.83
USP39-204ENST00000409766 UBXN10Q96LJ8 280 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 WBP1LQ9NX94 342 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 STOML2Q9UJZ1 356 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 RIMKLBQ9ULI2 386 aa20.22■□□□□ 0.83
USP39-204ENST00000409766 MATN2O00339 956 aa20.21■□□□□ 0.83
USP39-204ENST00000409766 PRRG1O14668 218 aa20.21■□□□□ 0.83
USP39-204ENST00000409766 MPSTP25325 297 aa20.21■□□□□ 0.83
USP39-204ENST00000409766 PTPRCAPQ14761 206 aa20.21■□□□□ 0.83
USP39-204ENST00000409766 FAM83EQ2M2I3 478 aa20.21■□□□□ 0.83
USP39-204ENST00000409766 PREPLQ4J6C6 727 aaPredicted RBP20.21■□□□□ 0.83
USP39-204ENST00000409766 SLC9B1Q4ZJI4 515 aa20.21■□□□□ 0.83
USP39-204ENST00000409766 CXorf57Q6NSI4 855 aaKnown RBP20.21■□□□□ 0.83
USP39-204ENST00000409766 TMC7Q7Z402 723 aa20.21■□□□□ 0.83
USP39-204ENST00000409766 LSMEM2Q8N112 164 aa20.21■□□□□ 0.83
USP39-204ENST00000409766 GPR150Q8NGU9 434 aa20.21■□□□□ 0.83
USP39-204ENST00000409766 TTC8Q8TAM2 541 aa20.21■□□□□ 0.83
USP39-204ENST00000409766 AGR3Q8TD06 166 aa20.21■□□□□ 0.83
USP39-204ENST00000409766 ZFRQ96KR1 1074 aaKnown RBP20.21■□□□□ 0.83
USP39-204ENST00000409766 INSIG1O15503 277 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 BUD23O43709 281 aaKnown RBP20.2■□□□□ 0.83
USP39-204ENST00000409766 ENTPD5O75356 428 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 RPP40O75818 363 aaKnown RBP20.2■□□□□ 0.83
USP39-204ENST00000409766 WISP3O95389 354 aaPredicted RBP20.2■□□□□ 0.83
USP39-204ENST00000409766 PIGNO95427 931 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 GOT2P00505 430 aaKnown RBP20.2■□□□□ 0.83
USP39-204ENST00000409766 URODP06132 367 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 PIRTP0C851 137 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 RPL14P50914 215 aaKnown RBP20.2■□□□□ 0.83
USP39-204ENST00000409766 SCNN1BP51168 640 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 HK2P52789 917 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 CYTH1Q15438 398 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 TECRLQ5HYJ1 363 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 AGAP9Q5VTM2 703 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 C16orf59Q7L2K0 433 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 DDX53Q86TM3 631 aaKnown RBP20.2■□□□□ 0.83
USP39-204ENST00000409766 TCEAL8Q8IYN2 117 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 TXNDC5Q8NBS9 432 aaKnown RBP20.2■□□□□ 0.83
USP39-204ENST00000409766 OR13C4Q8NGS5 318 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 AUTS2Q8WXX7 1259 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 C1orf21Q9H246 121 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 RNPEPL1Q9HAU8 725 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 GPAMQ9HCL2 828 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 SPG21Q9NZD8 308 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 PLA2G4CQ9UP65 541 aa20.2■□□□□ 0.83
USP39-204ENST00000409766 CCDC162PA2VCL2 907 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 CBX4O00257 560 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 GLP2RO95838 553 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 LTA4HP09960 611 aaKnown RBP20.2■□□□□ 0.82
USP39-204ENST00000409766 CDKN2DP55273 166 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 ASPHQ12797 758 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 PRKAA1Q13131 559 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 SPNS2Q8IVW8 549 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 PDCD6IPQ8WUM4 868 aaKnown RBP20.2■□□□□ 0.82
USP39-204ENST00000409766 EXOC2Q96KP1 924 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 DDX50Q9BQ39 737 aaKnown RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms